Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12 246 4e-60 seq26 100 4e-16 >seq12 Length=1432871 Score = 246 bits (272), Expect = 4e-60 Identities = 1125/1755 (64%), Gaps = 57/1755 (3%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| ||||| || | | ||| | || || ||||||| ||||| || |||||| | Sbjct 863586 GAAAGACCACAACACCTTCTTATGAGAGTGGCCGTCGGTATTCATGGTGATGATATTCCT 863527 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAAC 111724 || ||||| |||| ||| |||||| | | || |||| || ||| ||||||| Sbjct 863526 AAGGTGTTGGAATCATATGACTTGATGTCAAAGAGATAC-TTCACACATGCATCACCAAC 863468 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 | ||||| |||||||| ||| | || || ||||| || ||| | |||||| || Sbjct 863467 GTTGTTCAATGCTGGTACTCCACGCCCTCAGATGTCATCATGCTTCTTAGTTGCAATGAA 863408 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 || || || || | || || |||| ||| | | | ||||| || || ||| Sbjct 863407 AGATGACTCTATTGAAGGTATCTACGATACTTTGAAACAGTGTGCTTTGATTTCTAAGAC 863348 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCG--TATTAGA 111902 ||||||||||| || | ||||| || | | | || || || ||| |||| Sbjct 863347 TGCTGGTGGTATTGGTCTTCACATTCACAACATTCGTTCC-ACTGGT-TCGTATATTGCC 863290 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| |||||| ||| | ||||| ||||| ||| |||| || || ||| || || Sbjct 863289 GGTACTAATGGTACATCCAACGGTATAATTCCGATGGTTCGTGTGTTCAACAGTACTGCT 863230 Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAG 112016 | ||||| | |||| || || |||| || | || || | || | ||| Sbjct 863229 AGATATGTGGATCAAGGTG---GTAACAAGAGACCAGGTGCCATTGCTATTTACTTGGAG 863173 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 || ||||| || |||||| | || || | || | | || || ||| | |||||| Sbjct 863172 CCTTGGCATGCTGATATCTTCGACTTTATCGATATCAGAAAGAATCATGGTAAAGAGGAG 863113 Query 112077 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | |||| || ||| | || | ||||| |||||||||||| | || |||||| | || Sbjct 863112 ATTC-GTGCACGTGATTTGTTTCCAGCTCTTTGGATTCCAGATTTATTTATGAAGCGTGT 863054 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGC 112195 ||| | | ||| ||| | | || | ||| ||||||| |||||||| |||| Sbjct 863053 GGAGAGCAACGACAAGTGGACATTGTTCTCTCCTTCTGAGGCACCAGGTCTCTCAGATGT 862994 Query 112196 CGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC 112255 ||||| ||||| || | ||||| |||||| ||||| | || | | Sbjct 862993 TTACGGTGACGAGTTCGAGAAATTGTACACTCGTTACGAGAAAGAAGGACGTGGAAGAAG 862934 Query 112256 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 || ||| ||| | || | | ||| | ||| | || |||| || || ||||||| Sbjct 862933 AACAGTGAAGGCT-CAGAAGTTATGGTACCAGATTTTGGAGGCTCAGACAGAAACTGGTA 862875 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 112374 |||| | ||| | ||||| || || ||||| |||||||||||| ||||| |||||| Sbjct 862874 CACCTTTCATGATCTACAAGGATGCTTGTAATAGAAAGAGTAATCAGAAGAACTTGGGTA 862815 Query 112375 TGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 112434 ||||| ||| ||| | || || | | || | | ||||||| | Sbjct 862814 CCATCAAATCTTCGAACTTGTGCTGTGAGGTTGTCGAGTACTCCTCTCCAGATGAGGTTG 862755 Query 112435 CTGTGTGTAACCTCG-CATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGAC 112492 |||||||||| | | || || | | | | || | ||| || |||| || | | Sbjct 862754 GTGTGTGTAACTTGGCCAACATTTG-TTTGCCTGCCTTTGTTGAGTCAGATGAGGA--TC 862698 Query 112493 ATT--TG-----ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||| || | | || || | ||| | |||| ||| ||| || ||| ||| Sbjct 862697 ATTGCTGGTTCAACTTCGAGAAGTTGCACAAGATTACTAAAGTTGTTACCCGTAACTTAA 862638 Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGA 112602 || | |||||||| ||||||| || || || |||| || ||||| || || |||| Sbjct 862637 ACCGTGTTATTGACAGAAATTACTATCCAGTTCCTGAG---GCCCGTAACTCCAACATGA 862581 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGAT---GTATTCATTCTTTGTC 112659 || || | || |||| ||| ||| |||| ||||| || ||| | ||||| ||| | | Sbjct 862580 GAAACAGACCTATTGCTCTTGGTATCCAGGGTCTTGCTGATACCTTCTTCATGCTTAGAC 862521 Query 112660 GCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGT 112719 | | ||||| | || || ||| | || | ||||||||||| ||| Sbjct 862520 TAC---CTTTTGACTGTCCAGATGCACGGGAGCTTAACATTCAGATATTTGAGACCTTGT 862464 Query 112720 ATCACGCCGCTCTTGAGGCGAGTTC--GGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 112777 ||||||| || | ||| || | | || | || | || || ||| | ||| | || Sbjct 862463 ATCACGCTGCATTGGAG--GAATCCAACCAGCTTGCTGTGGAAGAGGGTACTTATCAGAC 862406 Query 112778 CTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837 | ||| || |||||||||||| | || | || |||| |||||||||| | || | Sbjct 862405 ATATGAAGGCTCTCCAGCTTCAAAGGGTATTCTACAATATGATATGTGGAACAAAAAGCC 862346 Query 112838 CAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 112897 | | || | |||||||| |||| |||| || ||| |||||| | || Sbjct 862345 TACGGATCTGTGGGACTGGGATACTCTGAAGGCTAAGATTGCCAAGACTGGTCTTAGAAA 862286 Query 112898 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 112957 | ||||||| ||||||| ||||| || || || || | || || ||||| |||| || Sbjct 862285 CTCTCTTTTGGTGGCACCTATGCCGACTGCTTCTACTTCCCAGATTATGGGTTATAACGA 862226 Query 112958 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGT 113017 ||| || ||||| | ||| | |||||||||| ||||||| || || || || || Sbjct 862225 ATGTTTCGAACCATTCACCTCTAACATCTATCAGAGAAGAGTTCTTGCTGGTGAATTCCA 862166 Query 113018 GATTGTCAA--CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGAT 113075 ||| || || | ||| | || || || | || || || | ||| | | | Sbjct 862165 GATCGTTAATCCTTACATGT--TGAGAGATCTTATTGACATGGGAATATGGAACGATGCA 862108 Query 113076 ATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGAT 113135 |||||| | |||| | | | ||||| ||||| || | | |||| ||| Sbjct 862107 ATGAAGAACTTCATCATTCACGACAACGGTTCTATTCAGAACTTGCCAAACGTTCCCGAT 862048 Query 113136 GAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATG 113195 | || |||||||||||| | ||||||||||| || |||| |||||| | ||| Sbjct 862047 AAGATCAAGAAGTTGTACAGGACAGTTTGGGAGATTTCTCAGAAGTCTGTCATCGTTATG 861988 Query 113196 GCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGA--ATCTATTCATGGAA 113252 || || ||| | || ||| | ||| || |||| ||||| ||| ||| || | Sbjct 861987 GCTGCTGATAG-GGGCGCATACATCTGCCAGTCTCAATCTATGAACATCCATT--TGCAG 861931 Query 113253 AGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAA 113312 ||||| ||| || | |||| |||||| | || | ||||||||||| | || Sbjct 861930 TCACCAACTATGGGTAAATTGACTTCCATGCACTTTTATGGCTGGAAGAAGGGCTTGAAG 861871 Query 113313 ACGGGGATGTATTAC 113327 || || ||||| ||| Sbjct 861870 ACAGGTATGTACTAC 861856 >seq26 Length=1546578 Score = 100 bits (110), Expect = 4e-16 Identities = 535/840 (64%), Gaps = 31/840 (4%) Strand=Plus/Plus Query 112008 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 112067 ||||||||||| ||||| |||||||| |||| ||||| || | ||||| || Sbjct 306826 TATCTTGAGCCCTGGCATGCGGATATTCTGGAATTCCTCGACCTCAAGAAGAACCACGGC 306885 Query 112068 GATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 112127 | ||||| |||| | |||||||| | || | |||||||| || || |||||| Sbjct 306886 AAGGAGGAAATGCGGGCAAGGGATCTCTTTTATGCGTTGTGGATTCCGGACCTGTTCATG 306945 Query 112128 AAGAGAGTTGAGGAGAGTGGCAAT-TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCT 112186 | | | | ||| || | | || ||| |||||||| | || | ||||| || || Sbjct 306946 AGGCGTG-TGAAGAATGACGAGATGTGGAGTCTCTTTTCTGAGGATACAGCACCAGGACT 307004 Query 112187 CTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 || || |||| ||||||||| |||| |||||| ||||||| ||| ||| | Sbjct 307005 ATCAGACAAATGGGGTCCCGAGTTTGAATCCCTGTACACACAGTACGAAAAAG-AAGGCC 307063 Query 112247 GGCGACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 112305 || || || | | || || | | |||||| | ||||| | ||||| |||| Sbjct 307064 GGTATCTACGGCAGTTGAAGGCCCGCAAGGTGTGGGAGAGGATTCTTTATTCTCAGACCG 307123 Query 112306 AGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 112365 |||| || || || | | ||||| || || | || || ||| ||||| |||| Sbjct 307124 AGACAGGAACGCCTTTCCTCCTTTATAAGGATTCGTGCAATGCGAAGTCGAATCAGAAGA 307183 Query 112366 ATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 | | || |||||| ||||| ||||| ||| | | || | || ||| | Sbjct 307184 ACCTTGGAACCATCAAGTCGTCCAATCTCTGCTGCGAAGTTGTCGAGTACTCATCCAAGG 307243 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | |||| || ||||| ||||| | || | | | || | || |||||| || || Sbjct 307244 ACGAGATCGCCGTGTGCAACCTTGGCTCTGTTGGGTTGCCGATGTTTGTGGA-GGAG-GA 307301 Query 112486 CAAAGAC----ATTTGATTAT-------GAAAAACTCCACGAAGTTACGAAAACTGTCAC 112534 || ||| | || | | || || |||||| | || |||| | || Sbjct 307302 AAACGACGGTACTAGGAGTTTCAACCTGGAGAAGCTCCACCAGGTGGTGAAAGTTCTCGT 307361 Query 112535 AAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAG-ACTGCTCGTAAAT 112593 || ||||| ||| | ||||| ||| | ||||| ||||| | ||| | | | Sbjct 307362 GAAGAACCTCAACCGGGTTATCGATGTGGGTGCATACCCGCTTGAGCAGTGC-AGAACGT 307420 Query 112594 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG---TATTCA 112650 | |||| ||| || ||||| |||| ||||||| ||||| | || |||| | |||| Sbjct 307421 CAAATACGAGGCATCGTCCGATTGCAGTCGGTGTTCAAGGATTAGCAGATGCTTTCTTCA 307480 Query 112651 TTCTTTGTCGCCACGCATTTG--ATTCCG-ACGAAGCGAAGGAAATCAATGCGCGTATAT 112707 || | | | |||||| | |||| || |||| | ||| || || | Sbjct 307481 GGCTGAGGTGTC---CATTTGGAAGTCCGTACTCCCGGAAGTTGAACAA---GCAAATCT 307534 Query 112708 TTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTC 112767 || |||| || || || || || |||||| | | ||||||||| || || || | Sbjct 307535 TTCAGACGATCTACCATGCAGCCCTTGAGCAGTCTGTGGAGTTGGCTCAGAAAGACGGCC 307594 Query 112768 CATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 ||||| || ||||| || || |||| || ||||| || ||||| | ||||||||||| Sbjct 307595 CATATTCGACGTTTGAAGGCTCGCCAGGCTCGCAAGGTGTTCTTCAGTATGATATGTGGG 307654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742167221600