Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12 181 1e-40 seq4 84.2 3e-11 >seq12 Length=1432871 Score = 181 bits (200), Expect = 1e-40 Identities = 1039/1647 (63%), Gaps = 51/1647 (3%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 |||||| || |||||||| |||| || || | |||||| ||||| |||||| | | Sbjct 861943 GTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAACGATGACAGA 862002 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || ||| ||||| || ||| ||||||| |||||||| | |||||||| || Sbjct 862003 CTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTTCTTGATCTTATCGGGAACGTTTGG 862062 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679 | ||| |||||||| || | | | |||| | |||||| | | ||| | Sbjct 862063 CAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCATCGTTCCATAT 862122 Query 109680 ACCGACCTTTTTGAGATCG-TCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGC 109736 || | | | ||||| |||||| | | | || || | || |||||||||| Sbjct 862123 TCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGA---ATTCACCAGC 862179 Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796 ||| | || | |||||||||| ||| | ||||||||||| || || | || | Sbjct 862180 AAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCAT 862239 Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856 || || | ||| ||||| || ||||| || |||| | |||| ||||| ||||| Sbjct 862240 AATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-- 862297 Query 109857 CGTCTTTACCCGCTCACGCATTGCG----TCCCAATCATAACGACCACTAAATT--TAGT 109910 ||||| | || | || || | ||||| || |||| | || ||| Sbjct 862298 -GTCTTGGCAATCTTA-GCCTTCAGAGTATCCCAGTC-------CCAC-AGATCCGTAGG 862347 Query 109911 CTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACT 109970 || | ||||||||| ||| || | ||||| | ||| ||||| || | | | Sbjct 862348 CTTTTTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGT 862407 Query 109971 CTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACAT 110030 || || | ||||| || | || | || | || |||| | ||| || ||||||| Sbjct 862408 CTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAA 862467 Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACA 110090 |||||||| || ||| || | || | ||| |||||| || || || | | Sbjct 862468 GGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGGTAGTCTA-- 862525 Query 110091 AAGAATAAACAC---ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || || || | ||| || |||||||| | ||| ||| |||| || | | |||| Sbjct 862526 -AGCATGAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCAT 862584 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| ||| || || || || || | || | ||| || || || || | || Sbjct 862585 GTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTT 862644 Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG-----TTTTCGTC 110262 || ||| || || || | || | || ||| | | |||| | || || Sbjct 862645 ACGGGTAACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGAACCAGCAATGATCCTC 862704 Query 110263 TCCTTATTGA-CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTC 110321 || | | | || | || | | ||| || | || |||||| | ||| || Sbjct 862705 ATCTGACTCAACAAAGGCAGGCAAACAAATGTTGGCCAAGTTACACACACCAACCTCATC 862764 Query 110322 TTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTT 110381 | || ||| || | || || |||||||| ||| || ||| ||||||||| Sbjct 862765 TGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTT 862824 Query 110382 CTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTT 110440 ||||||||| | ||| | || || |||||||| |||| |||| | || |||||||||| Sbjct 862825 CTTCTGATTACTCTTTCTA-TTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTT 862883 Query 110441 CCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCG 110499 | ||||| | || | ||| | ||||| | || | | | || ||| | | Sbjct 862884 CTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCCTTC-ACTGTTCTTCTTCCA 862942 Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 | ||||| | |||||| |||||||| | ||| || || | ||||| ||||| || Sbjct 862943 CGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAG 863002 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT-TCCACCCTCCTCAACCCTCTT 110618 ||||| |||| ||| |||| | | ||| || || ||| || || | ||| Sbjct 863003 AGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTC-TCCACACGCTT 863061 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC 110678 ||| || | || |||||||| | || | || | ||||| |||| ||| || | Sbjct 863062 CATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTT 863121 Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738 ||| || || | | || | |||||| | |||||| | ||||| || || | || Sbjct 863122 ACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTA 863181 Query 110739 GACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 | ||| |||| || ||| || ||| || | ||||| | || || Sbjct 863182 AATAGCAATGGCACCTGGTCTCTTGTTACCACCT---TGATCCACATATCTAGCAGTACT 863238 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||||| || | | ||| ||||| || || | |||| |||||| ||||| ||| Sbjct 863239 GTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATA 863298 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 || | ||| |||||||| ||| || || | |||||||||||| || |||| ||| Sbjct 863299 CGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAAT 863358 Query 110913 TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 ||||||| | | | ||| | || ||||| ||||| || || | || | |||| Sbjct 863359 CAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAAC 863418 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 || ||||| || ||||||||||| || || || || |||||||| | || |||| || Sbjct 863419 TAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGC 863478 Query 111033 ATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTT 111092 ||| |||| | | |||||| || |||| || | | || | ||| | Sbjct 863479 ATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATC 863538 Query 111093 ACCGTGAATACCAATGGCAACTCGCAT 111119 ||| |||||||| | ||| |||| ||| Sbjct 863539 ACCATGAATACCGACGGCCACTCTCAT 863565 >seq4 Length=381151 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 |||||||| ||| ||||||||||| | || || || | ||| || | | ||| Sbjct 376703 CTTACCGATAGCATCAATCTCATCAACAAAAACAATGGATGGTGCATTTTCCCTTGCAGT 376762 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 | || | ||||| || | || || |||||||| ||||| |||||||| | | Sbjct 376763 CTTAAACAACTCACGAACTCTTGAAGCACCGACACCTACAAACATTTCAACGAATTCAGA 376822 Query 11793 GGCAGAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | | ||| ||||||| ||| ||||| |||| ||||| || | || ||||| | | || Sbjct 376823 GCCTGAA-ACTGAATAGAATGGAACTTTAGCTTCACCCGCAGTTGCACGAGCCAACAAAG 376881 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| |||||||||| ||| | | || ||||| || ||||| || || Sbjct 376882 TTTTACCTGTACCAGGTGGTCCACACAATATCGCACCACGTGGTATCTTAGCTCC 376936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975779134000