Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12 255 7e-63 seq26 131 2e-25 seq4 89.7 6e-13 seq28 87.8 2e-12 >seq12 Length=1432871 Score = 255 bits (282), Expect = 7e-63 Identities = 925/1420 (65%), Gaps = 47/1420 (3%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 ||||||| |||||||||| | ||| | ||||| || ||||| |||| ||||| || || Sbjct 862186 TCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTG 862245 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 | || || || || ||||| ||||||| ||||||| ||| | |||||| | ||| Sbjct 862246 GGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCAGT---CTT 862302 Query 106045 G---ATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCAC 106099 | || |||| ||| ||||||||| | || | | || || |||| || Sbjct 862303 GGCAATCTTAGCCTTCAGAGTATCCCAGTCCCACA-GATCCGTAGGCTTTTTGTTCC-AC 862360 Query 106100 ATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCT 106159 |||||| |||| || | || | || | ||||| || ||| |||||| ||| | ||| Sbjct 862361 ATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCC 862420 Query 106160 TGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 106219 | | |||| | | | |||||| | |||||||||| ||| ||||| || Sbjct 862421 TCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATC 862480 Query 106220 CGAGCATTCATCTCCTTGGCTTCATCTGAA---TCAAATGCGTAGCGGCA-CAAAATAAA 106275 || || | |||| || ||||| | ||||| | |||| | || | || Sbjct 862481 TGAATGTTAAGCTCCCGTGC---ATCTGGACAGTCAAAAG-GTAGTCTAAGCATGAAGAA 862536 Query 106276 TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCG 106335 ||| || ||||| || | ||| | | |||||||||||| || ||| || || || || Sbjct 862537 GGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACG 862596 Query 106336 CGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 106392 || |||| || ||||| ||||||||||||| || ||||||| || |||||| Sbjct 862597 GGC---CTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGTAAC 862653 Query 106393 AATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT-TGACAT 106451 || || || || | || | || || | | || || | || |||| |||| Sbjct 862654 AACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGAACCAGCAATGATCCTCATCTGACTC 862713 Query 106452 A-CTTTGGAAGGG---CGATTGATG-CCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 | | || ||| | | || || |||| || || ||| | |||||| | | Sbjct 862714 AACAAAGGCAGGCAAACAAATGTTGGCCAAGTTACACACACCAACCTCATCTGGAGAGGA 862773 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | || || |||||||| ||| || || || ||||| ||||| || || Sbjct 862774 GTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATT 862833 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||||||| | || || ||||||||||||| |||| | || || || || || ||||| | Sbjct 862834 ACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGC 862893 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTC 106683 || | ||| | ||| | | || | | || || || || || |||| || Sbjct 862894 CTCCAAAATCTGGTACCATAACTTCTGAGCCTT---CACTGTTCTTCTTCCACGTCCTTC 862950 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 |||||| ||||| | || ||||| ||||| | || ||||||||||| Sbjct 862951 TTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGG 863010 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 ||||| ||| |||| | | ||| ||| | ||| || || |||||||| || | Sbjct 863011 TGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTC-TCCACACGCTTCATAAATA 863069 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGG 106861 ||||||||||| || | || ||| | ||| | | || ||| ||| || | ||| || Sbjct 863070 AATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCA-CGAATCTCCTCTTTACCATGA 863128 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | || | || || | |||||| || ||||| ||||| | || | || Sbjct 863129 TTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCA 863188 Query 106922 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || | || || | | ||| |||||| ||||| | || || ||| || || Sbjct 863189 ATGGCACCTGGTCTCTTG-TTACCACCTTGATCCACATATCTAGCAGTACTGTTGAACAC 863247 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 |||| ||| ||||| ||||| | ||| |||||| || || |||| || | | Sbjct 863248 ACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGT 863307 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | | || ||||| | |||||||| ||||| ||| || || ||||| Sbjct 863308 GGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCACA 863367 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 || | | ||| | |||||||| | || ||||| || || | || | | |||||| Sbjct 863368 CTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCA 863427 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 |||||||| || | ||| |||||||||||||| | ||||||| ||| || |||| Sbjct 863428 TGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGAA 863487 Query 107218 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 || || | |||||| ||| |||| ||||| || | ||| || || || || | Sbjct 863488 -GTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAA 863546 Query 107277 TGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 | |||| |||||| | ||||| | || ||| ||| |||| Sbjct 863547 TACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTC 863586 >seq26 Length=1546578 Score = 131 bits (144), Expect = 2e-25 Identities = 299/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||| || || |||| ||||| || |||||| | || ||| || | ||||| Sbjct 307262 TTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAGAGATTGGAC 307203 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 ||| || || || | ||||| || || ||| ||||||| |||||| || || Sbjct 307202 GACTTGATGGTTCCAAGGTTCTTCTGATTCGACTTCGCATTGCACGAATCCTTATAAAGG 307143 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCT 106657 | | | ||||| || ||||| ||||| || | ||||| || |||||| | | ||| Sbjct 307142 AGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTCCCACACCTTGCGGGCC 307083 Query 106658 GGTACAA-TGGCGTTGGC-CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 106715 | ||| || ||| | ||| || || ||||||| |||||| |||| |||||||| Sbjct 307082 --TTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGGATTCAAACT 307025 Query 106716 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 106775 | |||| ||| || || |||||||| ||| | |||||||||||| | Sbjct 307024 CGGGACCCCATTTGTCTGATAGTCCTGGTGC--TGTATCCTCAGAAAAGAGACTCCACAT 306967 Query 106776 CAC--CCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833 | | | | || || ||| ||||||| ||||| |||||||||| | |||||||||| Sbjct 306966 CTCGTCATTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAAAAGAGATC 306907 Query 106834 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATAT 106892 || ||| || || | || ||||| || | | || ||||| |||| |||| Sbjct 306906 CCTTGCCCGCATTTCCTCCTTGCCGTGGTTCT-TCTTGAGGTCGAGGAATTCCAGAATAT 306848 Query 106893 CCGCGTGCCATGGCTCAAGATA 106914 |||| ||||| ||||||||||| Sbjct 306847 CCGCATGCCAGGGCTCAAGATA 306826 >seq4 Length=381151 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || ||||| ||||| |||||| | || | | ||| | Sbjct 376713 GCATCAATCTCATCAACAAAAACAATGGATGGTGCATTTTCCCTTGCAGTCTTAAACAAC 376772 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || ||||| ||| || || ||||| |||||||| || || || | | | | ||| | Sbjct 376773 TCACGAACTCTTGAAGCACCGACACCTACAAACATTTCAACGAATTCAGAGCCTGAA-AC 376831 Query 9492 TGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || || ||| || || |||| |||||||||| | || || || | | ||| ||||| || Sbjct 376832 TGAATAGAATGGAACTTTAGCTTCACCCGCAGTTGCACGAGCCAACAAAGTTTTACCTGT 376891 Query 9551 ACCTGG 9556 ||| || Sbjct 376892 ACCAGG 376897 >seq28 Length=771433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| | || |||||| |||| || | || ||||||||||||||||| ||||| Sbjct 288846 TATGGAAGAGTGGCACCAAGATCTGGATTAGCGGTGAAGCATGGTATTCATACCGGTGCT 288905 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||| ||||| | ||||| | ||| ||||| || || || |||||||| | | || Sbjct 288906 GGTGTCATTGACTCAGACTACAGAGGAGAAGTTAAGGTTGTACTCTTCAACTTCAGCGAT 288965 Query 155164 AAAGACTTTGAG-GTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 ||||| ||| || | || || ||| | || |||||||| | |||||| Sbjct 288966 AAAGA-TTTCAGCATTAACGCGGGTGATAGAATTGCACAACTCATTCTTGAG 289016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980578757200