Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 >seq4 Length=381151 Score = 129 bits (142), Expect = 7e-25 Identities = 314/467 (67%), Gaps = 18/467 (4%) Strand=Plus/Minus Query 154641 GGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGA 154700 ||| ||||||| ||||| | || || | | || | ||||||||||| ||||| Sbjct 292870 GGAGCACAGGGCGAGTACACGGGTCTTTCTGTCATTCGTGCATACCATCACTC--CAGGA 292813 Query 154701 --GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAG--CACATGGAACTAATCCTGC 154756 |||| |||||||| || |||||| || | |||| |||| || || || || || Sbjct 292812 ATGATGCCAAAAGAAAGGTTGTTTTGATTCCTG--TCAGTGCACACGGTACAAACCCAGC 292755 Query 154757 TAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACAT 154816 | ||||| ||||| || | |||||||| ||||| ||| ||| || || | | Sbjct 292754 TTCTGCTGCAATGGCTGGTTTCAAAGTTGTGCCAGTCAAATGTCTTGAGGACGGAAGTTT 292695 Query 154817 AGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATG----TA 154872 |||| ||||| | |||||| |||| | | | | | ||| | || || | Sbjct 292694 GAACATGGAAGATATGGAGAAGCAAGCCAAGAAGCACGC---TGA-CAATCTTGCCGCTT 292639 Query 154873 TTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAG-ACAGATATGT 154931 | ||||| ||||||||| | || || | ||||| || |||||| || | || Sbjct 292638 TCATGATCACATACCCAACGACTTTCGGGCTTTTTGAGCCTGGCATTAGGACTGCAATAG 292579 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 | || || || | |||| |||| || ||| | ||||| || || | ||||| ||| Sbjct 292578 AC-ATTGTGCACAAATATGGCGGTCTTGTCTATATGGATGGTGCTAACATGAATGCCCAG 292520 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAA 155051 || ||||| | ||||| ||| | ||||||||| | || || | || | || || Sbjct 292519 GTTGGACTTACCTCACCATCTGATTTAGGTGCAGATCTTTGCCACTTGAATCTTCACAAG 292460 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 155098 |||||||| ||||| ||||||||||| |||||||| || ||||| || Sbjct 292459 ACATTCTGCATTCCTCATGGAGGTGGCGGTCCTGGTGTGGGTCCAAT 292413 Score = 111 bits (122), Expect = 2e-19 Identities = 192/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||||| || ||| ||||| || ||| |||| ||||||| ||| || || | Sbjct 293789 TGATATTGCAGTGGGTTCGGCACAAAGATTCGGTGTTCCAATGGGATTTGGTGGACCGTA 293730 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 || ||||| | ||| | |||| | ||||||||||| || || ||| |||| || Sbjct 293729 CGCAGCATTTATGGCAGTTAAAGACTCTTTAAAGAGAAAGATGCCAGGAAGACTTGTGGG 293670 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 ||| ||| || || | ||| | || | || || |||||||| ||||| Sbjct 293669 CGTTTCAAAAGACAGACTTGGCCACCCAGCTTTGAGGCTTGCTCTTCAGACTAGGGAGCA 293610 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAA 153985 ||| ||||||||||| ||||| || ||| ||||| || || |||||||| |||| || Sbjct 293609 GCACATCAGGAGAGAGAAAGCCACTTCTAATATCTGTACTGCACAGGCACTTTTGGCCAA 293550 Query 153986 TATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGG 154024 | | | | |||||| | ||||||||| |||| || Sbjct 293549 TGTTGCATCTTCCTATGCTGTCTATCATGGTCCAGAAGG 293511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212582795200