Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-22 >seq4 Length=381151 Score = 120 bits (132), Expect = 4e-22 Identities = 312/467 (67%), Gaps = 18/467 (4%) Strand=Plus/Minus Query 159316 GGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGA 159375 ||| ||||||| ||||| | || || | | || | ||||||||||| ||||| Sbjct 292870 GGAGCACAGGGCGAGTACACGGGTCTTTCTGTCATTCGTGCATACCATCACTC--CAGGA 292813 Query 159376 --GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAG--CACATGGAACTAATCCTGC 159431 |||| |||||||| || |||||| || | |||| |||| || || || || || Sbjct 292812 ATGATGCCAAAAGAAAGGTTGTTTTGATTCCTG--TCAGTGCACACGGTACAAACCCAGC 292755 Query 159432 ATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACAT 159491 || || | ||||| || | |||||||| ||||| ||| ||| || || | | Sbjct 292754 TTCTGCTGCAATGGCTGGTTTCAAAGTTGTGCCAGTCAAATGTCTTGAGGACGGAAGTTT 292695 Query 159492 AGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATG----TA 159547 |||| ||||| | |||||| |||| | | | | | ||| | || || | Sbjct 292694 GAACATGGAAGATATGGAGAAGCAAGCCAAGAAGCACGC---TGA-CAATCTTGCCGCTT 292639 Query 159548 TTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAG-ACAGATATGT 159606 | ||||| ||||| ||| | || || | ||||| | ||| || || | || Sbjct 292638 TCATGATCACATACCCAACGACTTTCGGGCTTTTTGAGCCTGGCATTAGGACTGCAATAG 292579 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 | ||||| || | |||| |||| || ||| | |||||||| || | ||||| ||| Sbjct 292578 AC-ATTGTGCACAAATATGGCGGTCTTGTCTATATGGATGGTGCTAACATGAATGCCCAG 292520 Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 || || || | ||||| ||| | ||||||||| | || || | || | || ||| Sbjct 292519 GTTGGACTTACCTCACCATCTGATTTAGGTGCAGATCTTTGCCACTTGAATCTTCACAAG 292460 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 159773 |||||||| ||||| ||||||||||| |||||||| || ||||| || Sbjct 292459 ACATTCTGCATTCCTCATGGAGGTGGCGGTCCTGGTGTGGGTCCAAT 292413 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| || ||| |||| ||||||| || || || | || ||||| | ||| | | Sbjct 293767 CAAAGATTCGGTGTTCCAATGGGATTTGGTGGACCGTACGCAGCATTTATGGCAGTTAAA 293708 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 ||| | ||||||||||| || || ||| |||| || ||| ||| || || Sbjct 293707 GACTCTTTAAAGAGAAAGATGCCAGGAAGACTTGTGGGCGTTTCAAAAGACAGACTTGGC 293648 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 | ||| | || | || || |||||||| |||||||| ||||| ||||| ||||| Sbjct 293647 CACCCAGCTTTGAGGCTTGCTCTTCAGACTAGGGAGCAGCACATCAGGAGAGAGAAAGCC 293588 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682 || ||| ||||| || ||||| ||||| |||| ||| | | | |||||| | Sbjct 293587 ACTTCTAATATCTGTACTGCACAGGCACTTTTGGCCAATGTTGCATCTTCCTATGCTGTC 293528 Query 158683 TATCATGGTGCAGATGG 158699 ||||||||| |||| || Sbjct 293527 TATCATGGTCCAGAAGG 293511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050979480800