Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq25 174 3e-38 seq12 170 4e-37 seq1 156 9e-33 >seq25 Length=1112461 Score = 174 bits (192), Expect = 3e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| Sbjct 695704 AACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTC 695763 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| || || || | | || |||||||| ||||| ||||| || ||||| Sbjct 695764 CAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTG 695823 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| |||||||| || || || || ||||| ||| ||| || || || || | ||||| Sbjct 695824 AATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTT 695883 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| ||||| || || | ||||||| Sbjct 695884 TCCCGTCAACGTTTTAACAAAGATTTGCATT 695914 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | ||| Sbjct 695939 TGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGC 695998 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | | || |||||||| ||||| ||||| || |||||||| ||| Sbjct 695999 TTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTT 696058 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || || || || ||||| ||| ||| || || || || | |||||||| ||| Sbjct 696059 TGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTC 696118 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || | ||||||| Sbjct 696119 AACGTTTTAACAAAGATTTGCATT 696142 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | ||| Sbjct 696167 TGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGC 696226 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | | || |||||||| ||||| ||||| || |||||||| ||| Sbjct 696227 TTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTT 696286 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || || || || ||||| ||| ||| || || || || | |||||||| ||| Sbjct 696287 TGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTC 696346 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || | ||||||| Sbjct 696347 AACGTTTTAACAAAGATTTGCATT 696370 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | ||| Sbjct 696395 TGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGC 696454 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | | || |||||||| ||||| ||||| || |||||||| ||| Sbjct 696455 TTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTT 696514 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || || || || ||||| ||| ||| || || | || | |||||||| || Sbjct 696515 TGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTTTCCAGTT 696574 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | |||||| Sbjct 696575 AATGTCTTCACAAAAATTTGCAT 696597 >seq12 Length=1432871 Score = 170 bits (188), Expect = 4e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||||||| ||||| || || || ||||| || | | ||| Sbjct 1192728 TCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGT 1192787 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | ||||||||| || ||||| | || || || ||||| || || || Sbjct 1192788 TCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCC 1192847 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||| || ||||||||||| || ||||||||||| ||| ||||| || | Sbjct 1192848 CTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAA 1192907 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | ||||| || |||||||| || ||||| | |||||||| Sbjct 1192908 GGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTT 1192951 >seq1 Length=1856900 Score = 156 bits (172), Expect = 9e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||||||| || || || ||||| ||||| || | | ||| Sbjct 768256 TCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGT 768197 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | ||||||||| || ||||| | || ||||| || || ||||| || Sbjct 768196 TCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCC 768137 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || ||||||||||| || |||||||| || ||| ||||| || | Sbjct 768136 CTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAA 768077 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | ||||| || ||||| || || ||||| | |||||||| Sbjct 768076 GGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTT 768033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481173543010