Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq25 174 3e-38
seq12 170 4e-37
seq1 156 9e-33
>seq25
Length=1112461
Score = 174 bits (192), Expect = 3e-38
Identities = 165/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||| ||||||||||||||||||||||| | ||| ||||| || |||||
Sbjct 695704 AACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTC 695763
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| |||||||| || || || | | || |||||||| ||||| ||||| || |||||
Sbjct 695764 CAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTG 695823
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| |||||||| || || || || ||||| ||| ||| || || || || | |||||
Sbjct 695824 AATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTT 695883
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| ||||| ||||| || || | |||||||
Sbjct 695884 TCCCGTCAACGTTTTAACAAAGATTTGCATT 695914
Score = 170 bits (188), Expect = 4e-37
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | |||
Sbjct 695939 TGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGC 695998
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || || || | | || |||||||| ||||| ||||| || |||||||| |||
Sbjct 695999 TTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTT 696058
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| || || || || ||||| ||| ||| || || || || | |||||||| |||
Sbjct 696059 TGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTC 696118
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
|| ||||| || || | |||||||
Sbjct 696119 AACGTTTTAACAAAGATTTGCATT 696142
Score = 170 bits (188), Expect = 4e-37
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | |||
Sbjct 696167 TGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGC 696226
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || || || | | || |||||||| ||||| ||||| || |||||||| |||
Sbjct 696227 TTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTT 696286
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| || || || || ||||| ||| ||| || || || || | |||||||| |||
Sbjct 696287 TGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTC 696346
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
|| ||||| || || | |||||||
Sbjct 696347 AACGTTTTAACAAAGATTTGCATT 696370
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | |||
Sbjct 696395 TGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGC 696454
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || || || | | || |||||||| ||||| ||||| || |||||||| |||
Sbjct 696455 TTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTT 696514
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| || || || || ||||| ||| ||| || || | || | |||||||| ||
Sbjct 696515 TGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTTTCCAGTT 696574
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || || || || | ||||||
Sbjct 696575 AATGTCTTCACAAAAATTTGCAT 696597
>seq12
Length=1432871
Score = 170 bits (188), Expect = 4e-37
Identities = 172/224 (77%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | |||||| || | ||||||||| ||||| || || || ||||| || | | |||
Sbjct 1192728 TCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGT 1192787
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || | ||||||||| || ||||| | || || || ||||| || || ||
Sbjct 1192788 TCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCC 1192847
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| |||||||| || ||||||||||| || ||||||||||| ||| ||||| || |
Sbjct 1192848 CTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAA 1192907
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| | ||||| || |||||||| || ||||| | ||||||||
Sbjct 1192908 GGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTT 1192951
>seq1
Length=1856900
Score = 156 bits (172), Expect = 9e-33
Identities = 169/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | |||||| || | ||||||||| || || || ||||| ||||| || | | |||
Sbjct 768256 TCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGT 768197
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || | ||||||||| || ||||| | || ||||| || || ||||| ||
Sbjct 768196 TCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCC 768137
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| || || || || ||||||||||| || |||||||| || ||| ||||| || |
Sbjct 768136 CTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAA 768077
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| | ||||| || ||||| || || ||||| | ||||||||
Sbjct 768076 GGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTT 768033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481173543010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |