Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq25 104 2e-17
seq12 91.5 1e-13
seq1 86.0 4e-12
>seq25
Length=1112461
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||||||| | ||||| |||| || ||||| ||||| || || || |
Sbjct 695913 TTCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 695972
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
|||| ||| | | || |||| || || ||||||||||| | | ||||||||| | |
Sbjct 695973 AAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 696032
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928
| | || ||||| || |||||| || || || || ||||||| ||| |
Sbjct 696033 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAAC--AT--TATCGATAGTGTCAGAAGAT 696088
Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || | || || || |||||||| | || || |||||||| |||||
Sbjct 696089 TCAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696141
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||||||| | ||||| |||| || ||||| ||||| || || || |
Sbjct 696141 TTCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 696200
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
|||| ||| | | || |||| || || ||||||||||| | | ||||||||| | |
Sbjct 696201 AAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 696260
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928
| | || ||||| || |||||| || || || || ||||||| ||| |
Sbjct 696261 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAAC--AT--TATCGATAGTGTCAGAAGAT 696316
Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || | || || || |||||||| | || || |||||||| |||||
Sbjct 696317 TCAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696369
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||||||| | ||||| |||| || ||||| ||||| || || || |
Sbjct 696369 TTCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 696428
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
|||| ||| | | || |||| || || ||||||||||| | | ||||||||| | |
Sbjct 696429 AAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 696488
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928
| | || ||||| || |||||| || || || || ||||||| ||| |
Sbjct 696489 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAAC--AT--TATCGATAGTGTCAGAAGAT 696544
Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || | || || || ||||| || | ||||||||||| || |||||
Sbjct 696545 TCAACCTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597
Score = 100 bits (110), Expect = 2e-16
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||| || ||||| | ||||||||||| || ||||| ||||| || || || |||
Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| ||| | | || |||| || || ||||||||||| | | ||||||||| | ||
Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930
| || ||||| || |||||| || || || || ||||||| ||| | ||
Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAAC--AT--TATCGATAGTGTCAGAAGATTC 695862
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| || | || || || |||||||| | || || |||||||| |||||
Sbjct 695863 AACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 695913
>seq12
Length=1432871
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811
|| || || ||||| ||||| |||||||||| || || ||||| ||||| ||||||
Sbjct 1192720 TTACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCC 1192779
Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871
|| | ||| |||| |||| ||| || || ||||| || | || ||||| ||| |
Sbjct 1192780 GACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGT 1192839
Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931
|| | ||||||||||| ||||| || ||||| | || | || | |||
Sbjct 1192840 GGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCC 1192899
Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || | ||| || || || || || | |||||| || || || ||||| ||
Sbjct 1192900 ACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952
>seq1
Length=1856900
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||| ||||| ||||| |||||||||| || ||| ||||||||||| ||||| ||
Sbjct 768261 CCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAC 768202
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| ||| |||| |||| ||| || || ||||| || | || || || || | ||
Sbjct 768201 AAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 768142
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||| || ||||| || ||||| | || | || | ||| ||
Sbjct 768141 ATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACC 768082
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| | ||| || || || ||||| | ||||| || || || ||||| ||
Sbjct 768081 TCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633481305840
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