Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12 246 3e-60 seq23 201 1e-46 >seq12 Length=1432871 Score = 246 bits (272), Expect = 3e-60 Identities = 567/852 (67%), Gaps = 10/852 (1%) Strand=Plus/Plus Query 47956 ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCA 48015 ||||||| |||||||| || | |||||| | | ||||| || |||||||| | || Sbjct 862806 ATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCA 862865 Query 48016 TAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCT 48075 | |||||||| ||||||||| |||||| || | || | ||| | || ||||| Sbjct 862866 TGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCCT 862925 Query 48076 TTATAACAGCTCTAGCTT-----TATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 | | | | ||| ||| | | || | ||||| ||| || || ||||| || Sbjct 862926 TCA---CTGTTCTT-CTTCCACGTCCT-TCTTTCTCGTAACGAGTGTACAATTTCTCGAA 862980 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 || || || || |||| | || || ||| |||| | | ||||| ||| | Sbjct 862981 CTCGTCACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTT 863040 Query 48191 CTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATC 48250 || | | | || | ||||||||| |||||| |||||||||||| ||| ||||| Sbjct 863041 GTCGTTGCTCTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATC 863100 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 | | | | || || || ||| |||| || | | || | |||||| | ||||| Sbjct 863101 ACGTGCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATC 863160 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 ||||||||| || || || || || || || ||||||||| || ||||| |||||||| Sbjct 863161 AGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATC 863220 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | |||||| |||||| |||| | || | | ||| || | ||||| || ||| |||| Sbjct 863221 CACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACC 863280 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||| || || | |||||| ||| | | | || || ||| || ||| ||||| Sbjct 863281 ATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACC 863340 Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550 ||| || | ||||| || | ||||||| |||| | ||||| || || ||||| ||| Sbjct 863341 ACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGA 863400 Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610 |||||| |||| | || || || ||||| || || | ||| || | ||| Sbjct 863401 GTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATT 863460 Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 || || ||||| |||||||| | || || ||| ||| | ||| | ||||| ||| | Sbjct 863461 GAACAACGTTGGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAA 863520 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 || | ||||| ||| ||||| | | || | ||| | | | ||| || Sbjct 863521 CACCTTAGGAATATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGG 863580 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 ||||||| ||| || ||| ||| |||| ||||| || |||||| || || ||||| Sbjct 863581 TCTTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACC 863640 Query 48791 AAAATAGTTGTA 48802 ||| |||||||| Sbjct 863641 AAAGTAGTTGTA 863652 >seq23 Length=1356690 Score = 201 bits (222), Expect = 1e-46 Identities = 593/899 (66%), Gaps = 39/899 (4%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || || || |||| |||||| || |||||||||||||| || || | || || ||| | Sbjct 991523 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 991464 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || || ||||||||| | || || || | || | | |||| ||| | | || Sbjct 991463 TCCATGAAGTCGAATGGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGC 991404 Query 18790 AGTCTATCCGCTACA-AATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTA 18847 | || || || ||| || | || || || | ||||||||| | ||||| || | || Sbjct 991403 AACCTGTCGGC-ACAGAACTCAACGTACTGAGC-CATCATATCGAAGTTCATACCGAGTA 991346 Query 18848 ATTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | ||| || || || ||| | ||||| | || | | ||||| || ||||| | || Sbjct 991345 AAGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATG 991287 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTAAAC------ATCA 18958 || | |||| || | || || | | |||| || || | || Sbjct 991286 AT-----------TCTCTTGATAATGACCTTACTTGGTGGATGCTTCAAGTGAGAGAACA 991238 Query 18959 AA---CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 || ||||||||||| |||||| ||||| ||||| | || | || ||||| || | Sbjct 991237 AAAGGCATGCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACG 991178 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | | || ||||||| ||||| || || |||||||| || || ||||| |||||||| | Sbjct 991177 TAAGGCCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGA 991118 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 | || | |||||| | || ||||||||||| | ||| || |||| |||||||| || Sbjct 991117 AAAACACACCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCAT 991058 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | | |||||| ||| ||||| |||||||| || | | ||| ||||| | || | Sbjct 991057 TGTTTATCCATCTCAAAGCCCATAAAGCCTTCTCCTTAATAGGTGGAATTGTATGGATGG 990998 Query 19196 AATTAAATAGATA--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 ||| || | || | || || ||| | || | | ||| | || ||||| | Sbjct 990997 CATTGAACAAGTAGTCGGACTCT-TTCT-TGTCAGTGATATAGGTCTCGATCAAAAGGGA 990940 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 || | || || || || || || | ||||| || || || || |||||| || Sbjct 990939 ATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTC 990880 Query 19314 TGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 | || ||| || | || || ||| | | ||||||| |||| || || ||||| Sbjct 990879 AGGTAACTGCACCT-GCTTCATAAAGTTCTGTGCCAAATTCTCATCGACAATACCATCTG 990821 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT-- 19430 ||| ||||| || || || ||| | || || | | | |||| || || || | Sbjct 990820 AAGCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCAT-TGGCATTCATCTTG 990762 Query 19431 --ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 |||||| || | | ||| || || | ||| | || || | ||||| ||||| ||| Sbjct 990761 TCATTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCC 990702 Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 || || || || ||||| | |||||||||| || || ||||| || || || ||||| Sbjct 990701 TCGGCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108589209200