Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq25 136 6e-27
seq23 131 2e-25
>seq25
Length=1112461
Score = 136 bits (150), Expect = 6e-27
Identities = 174/239 (73%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| ||||||| ||||| ||||| || || || |||| || ||| |||
Sbjct 695914 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 695855
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | ||| || || || | || || |||||||| ||||| || || ||||| ||
Sbjct 695854 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 695795
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || ||||| | |||||||||||| | ||||| ||||| | || ||||| ||
Sbjct 695794 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695735
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058
||| |||||| | || ||||| || || | || |||||||| || |||| ||||
Sbjct 695734 TATTCAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTAAGAGGAGGCCTGTAGAATT 695676
Score = 127 bits (140), Expect = 3e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| ||||||| ||||| ||||| || || || |||| || ||| |||
Sbjct 696142 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696083
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | ||| || || || | || || |||||||| ||||| || || ||||| ||
Sbjct 696082 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696023
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || ||||| | |||||||||||| | ||||| ||||| | || ||||| ||
Sbjct 696022 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695963
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
||| |||||| | || |||||||| || | || || || || ||
Sbjct 695962 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 695915
Score = 127 bits (140), Expect = 3e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| ||||||| ||||| ||||| || || || |||| || ||| |||
Sbjct 696370 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696311
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | ||| || || || | || || |||||||| ||||| || || ||||| ||
Sbjct 696310 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696251
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || ||||| | |||||||||||| | ||||| ||||| | || ||||| ||
Sbjct 696250 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696191
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
||| |||||| | || |||||||| || | || || || || ||
Sbjct 696190 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696143
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || ||||| |||||||| || || || ||||| || ||| ||||
Sbjct 696597 ATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCT 696538
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || | || || |||||||| ||||| || || ||||| ||
Sbjct 696537 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696478
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | |||||||||||| | ||||| ||||| | || ||||| |||
Sbjct 696477 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 696418
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| |||||| | || |||||||| || | || || || || ||
Sbjct 696417 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696371
>seq23
Length=1356690
Score = 131 bits (144), Expect = 2e-25
Identities = 571/884 (65%), Gaps = 60/884 (7%)
Strand=Plus/Minus
Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938
||| | ||||| |||||||| ||||| || |||| || || | ||| || || |||
Sbjct 991508 ACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAAT 991449
Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT-AATCTATCTGCTAC 17997
||||| ||| || ||| || || | ||| || |||| || || || || ||
Sbjct 991448 GGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCG-ATAAGCAACCTGTCGGC-AC 991391
Query 17998 A-AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA--GGTAG 18054
| || || || || || | ||||| |||| | |||||||| |||| |||| || ||
Sbjct 991390 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAA--GAAACTGGAAG 991333
Query 18055 AGCATCAATA-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT------GTTTA 18107
||| || | | ||| | |||||| || | ||||| ||| | || || | | |
Sbjct 991332 AGCGTCTCTCCAGAAAGT-TTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAA 991274
Query 18108 TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167
| ||| || | ||| || | | |||| | | || | || |||||||
Sbjct 991273 TGACCTTACTTGGTGG------ATGCTTCAAGTGAG---AGAACAAAAGGCATGCAAAAT 991223
Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227
| || |||| ||| ||||||||| | || | |||||| ||||| | || ||||| |
Sbjct 991222 CGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCA 991163
Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCA 18286
|||||| || || | ||| || || || || |||| | | ||| || || | ||| |||
Sbjct 991162 AACCTCTCTTCTTCAACCAGAAGATGGAGGC-AAACGATCCAGAGAAAAACACACCTTCA 991104
Query 18287 ACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTATTGCTCAGTATCCAT 18343
| | || || || | ||||| |||||| | | | || | |||| | |||||||
Sbjct 991103 ATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCCAT 991047
Query 18344 TTTTGTGCCCAT-------TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396
| |||||| ||||||| ||| || || | | || |||||
Sbjct 991046 CTCAAAGCCCATAAAGCCTTCTCCTTA-------ATAGGTGGAATTGTATGGATGGCATT 990994
Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456
||||| | || ||||| || | ||||| || ||||| || | ||||| |
Sbjct 990993 GAACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGT 990934
Query 18457 TTCAGAATGTATGCTTTC---CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513
||||| || ||| | || |||| ||||| |||| ||| || | ||| ||||| ||
Sbjct 990933 CTCAGAGTGGATGTTCTCAACCATA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGG 990877
Query 18514 ATATTGAATCTCGCT--ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571
| || | || ||| ||||| | | | | |||||||||||| || ||||| || | |
Sbjct 990876 TAACTGCACCT-GCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAA 990819
Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628
| || || || ||||| ||| ||||| | | | ||||| | || | |||
Sbjct 990818 GCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCA 990759
Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688
||||| || | ||| ||||| ||||| | || || | ||||| ||||| | |||
Sbjct 990758 TTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCG 990699
Query 18689 GCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732
|||| |||||||||| | ||||| || | || ||||| ||
Sbjct 990698 GCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAA 990655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871725548000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |