Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq25 136 6e-27 seq23 131 2e-25 >seq25 Length=1112461 Score = 136 bits (150), Expect = 6e-27 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| ||||| ||||| || || || |||| || ||| ||| Sbjct 695914 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 695855 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || | || || |||||||| ||||| || || ||||| || Sbjct 695854 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 695795 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | |||||||||||| | ||||| ||||| | || ||||| || Sbjct 695794 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695735 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058 ||| |||||| | || ||||| || || | || |||||||| || |||| |||| Sbjct 695734 TATTCAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTAAGAGGAGGCCTGTAGAATT 695676 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| ||||| ||||| || || || |||| || ||| ||| Sbjct 696142 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696083 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || | || || |||||||| ||||| || || ||||| || Sbjct 696082 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696023 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | |||||||||||| | ||||| ||||| | || ||||| || Sbjct 696022 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695963 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| |||||| | || |||||||| || | || || || || || Sbjct 695962 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 695915 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| ||||| ||||| || || || |||| || ||| ||| Sbjct 696370 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696311 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || | || || |||||||| ||||| || || ||||| || Sbjct 696310 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696251 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | |||||||||||| | ||||| ||||| | || ||||| || Sbjct 696250 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696191 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| |||||| | || |||||||| || | || || || || || Sbjct 696190 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696143 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||||| |||||||| || || || ||||| || ||| |||| Sbjct 696597 ATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCT 696538 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || | || || |||||||| ||||| || || ||||| || Sbjct 696537 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696478 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||||||||| | ||||| ||||| | || ||||| ||| Sbjct 696477 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 696418 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || |||||||| || | || || || || || Sbjct 696417 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696371 >seq23 Length=1356690 Score = 131 bits (144), Expect = 2e-25 Identities = 571/884 (65%), Gaps = 60/884 (7%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | ||||| |||||||| ||||| || |||| || || | ||| || || ||| Sbjct 991508 ACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAAT 991449 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT-AATCTATCTGCTAC 17997 ||||| ||| || ||| || || | ||| || |||| || || || || || Sbjct 991448 GGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCG-ATAAGCAACCTGTCGGC-AC 991391 Query 17998 A-AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA--GGTAG 18054 | || || || || || | ||||| |||| | |||||||| |||| |||| || || Sbjct 991390 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAA--GAAACTGGAAG 991333 Query 18055 AGCATCAATA-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT------GTTTA 18107 ||| || | | ||| | |||||| || | ||||| ||| | || || | | | Sbjct 991332 AGCGTCTCTCCAGAAAGT-TTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAA 991274 Query 18108 TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167 | ||| || | ||| || | | |||| | | || | || ||||||| Sbjct 991273 TGACCTTACTTGGTGG------ATGCTTCAAGTGAG---AGAACAAAAGGCATGCAAAAT 991223 Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227 | || |||| ||| ||||||||| | || | |||||| ||||| | || ||||| | Sbjct 991222 CGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCA 991163 Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCA 18286 |||||| || || | ||| || || || || |||| | | ||| || || | ||| ||| Sbjct 991162 AACCTCTCTTCTTCAACCAGAAGATGGAGGC-AAACGATCCAGAGAAAAACACACCTTCA 991104 Query 18287 ACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTATTGCTCAGTATCCAT 18343 | | || || || | ||||| |||||| | | | || | |||| | ||||||| Sbjct 991103 ATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCCAT 991047 Query 18344 TTTTGTGCCCAT-------TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 | |||||| ||||||| ||| || || | | || ||||| Sbjct 991046 CTCAAAGCCCATAAAGCCTTCTCCTTA-------ATAGGTGGAATTGTATGGATGGCATT 990994 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||||| | || ||||| || | ||||| || ||||| || | ||||| | Sbjct 990993 GAACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGT 990934 Query 18457 TTCAGAATGTATGCTTTC---CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 ||||| || ||| | || |||| ||||| |||| ||| || | ||| ||||| || Sbjct 990933 CTCAGAGTGGATGTTCTCAACCATA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGG 990877 Query 18514 ATATTGAATCTCGCT--ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 | || | || ||| ||||| | | | | |||||||||||| || ||||| || | | Sbjct 990876 TAACTGCACCT-GCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAA 990819 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628 | || || || ||||| ||| ||||| | | | ||||| | || | ||| Sbjct 990818 GCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCA 990759 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| || | ||| ||||| ||||| | || || | ||||| ||||| | ||| Sbjct 990758 TTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCG 990699 Query 18689 GCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 |||| |||||||||| | ||||| || | || ||||| || Sbjct 990698 GCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAA 990655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871725548000