Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 226 8e-54 seq4 111 5e-19 seq3 96.9 1e-14 >seq12 Length=1432871 Score = 226 bits (250), Expect = 8e-54 Identities = 599/906 (66%), Gaps = 9/906 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||| ||||||||||| ||| ||| |||||||| || || |||||||| || Sbjct 862774 GTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATT 862833 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || || ||||||||||||||||| | ||| | || || || || || |||| || Sbjct 862834 ACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGC 862893 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATT-TGCTTGTTGTATCTGCCTTCCG 155808 |||| ||||| ||| | | | || || | | | ||| || | | ||||| Sbjct 862894 CTCCAAAATCTGGTACCATAACTTCTGAGCCTTCACTGTTCTTCTTCCACGT-CCTTCTT 862952 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||| || | |||| | | | || ||||||||| ||| || || || Sbjct 862953 TCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGGTG 863012 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 || | || | |||| | ||| | | || | ||||||| |||||||| || Sbjct 863013 CCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATAAATAAAT 863072 Query 155929 CACTCGCCCAAATAGCATAGAAA-AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987 | ||||| ||| | |||| | || | ||| |||||| | || |||||| Sbjct 863073 CTGGAATCCAAAGAGC-TGGAAACAAATCACGTGCACGAATCTCCTCTTTACCATGATTC 863131 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || | | || | || || ||||||| ||| ||||||| || ||||||| Sbjct 863132 TTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAATG 863191 Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||| |||||| ||||| ||||| ||||| | |||||| | ||||| |||| Sbjct 863192 GCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGAACACACGA 863251 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 | ||| ||||| ||||| ||||| || ||||| || ||| ||||| |||||||| || Sbjct 863252 ACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGTGGAA 863311 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| || ||||| || || ||||||||||| | |||||||| ||| || | Sbjct 863312 CGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCACACTGT 863371 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | ||||| | | |||||||||||||| ||||||| ||||| | || |||| || Sbjct 863372 TTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCATGAT 863431 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 | ||||| ||||| || ||||| ||||| | || |||| |||||| | || || Sbjct 863432 GACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGAAGTAT 863491 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAG 156404 | || ||||| | || |||| ||| | ||| || || | || ||||||| | Sbjct 863492 CTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAATACCG 863551 Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGA 156464 | | || ||||| | || || || | || ||| | |||| ||||| || Sbjct 863552 ACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATTAATTCTCAAC 863611 Query 156465 AGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA-ATCAAACAGAAAATCACGGTTGTA 156523 || || | ||||||| ||| || || || || || | ||| | || ||||||| ||| Sbjct 863612 AGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTG-AAGTCACGGTCGTA 863670 Query 156524 ATCAAT 156529 || ||| Sbjct 863671 ATTAAT 863676 >seq4 Length=381151 Score = 111 bits (122), Expect = 5e-19 Identities = 220/321 (69%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| | ||||||||| || |||| |||| | | || | ||||| || ||| | Sbjct 376704 TTACCGATAGCATCAATCTCATCAACAAAAACAATGGATGGTGCATTTTCCCTTGCAGTC 376763 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || || | || | || || || | ||| ||| ||||||| || |||||||| Sbjct 376764 TTAAACAACTCACGAACTCTTGAAGCACCGACACCTACAAACATTTCAACGAATTCAGAG 376823 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || ||| |||| ||||| || || ||||| || || ||| | |||| | || Sbjct 376824 CCTGAAACT-GAATAGAATGGAACTTTAGCTTCACCCGCAGTTGCACGAGCCAACAAAGT 376882 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 |||||||| ||||||||||| |||| | || ||||| || || || || Sbjct 376883 TTTACCTGTACCAGGTGGTCCACACAATATCGCACCACGTGGTATCTTAGCTCC--CAAC 376940 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| |||| ||| ||| ||||||||| | |||| |||| || || | |||||| Sbjct 376941 CTTTCATATCTCTGCGGGTCCTTTAAAAAGTTGACAAATTCCAGAATCTCTTCTTTTGCT 377000 Query 289324 TCATCACATCCTGCTACATCA 289344 |||||||| || || |||||| Sbjct 377001 TCATCACAACCAGCGACATCA 377021 >seq3 Length=433654 Score = 96.9 bits (106), Expect = 1e-14 Identities = 212/314 (68%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| |||| ||||| || || ||||| || || || || | || || Sbjct 66234 CATGATGTCCTCCAATGCCTTGACCAACCGCCGCTGGATGTATCCGGTCTCTGCGGTCTT 66175 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || || || | || |||| || |||| ||||||||||| | ||| | ||| Sbjct 66174 CACGGCCGTGTCGATCAACCCCTCACGGCCTGCCATCGCATGGAAGAACAACTCCTGCGG 66115 Query 302685 TCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 | || |||| | ||| | | || |||| |||||||| | ||||| ||| | |||| Sbjct 66114 T-GTCAAGCCTCGCAAGTACG-AGTTCTCGACGAAACCCTTGGACTCGGCCGAGTAGTCG 66057 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||| || ||||| |||| | | || | | | ||| | ||| ||||| || || Sbjct 66056 TCCTTCGTGAAGTGCGGCAACGAGCGGTCCGCGAACCCGAAGTTGATCCGCTTACCTTCG 65997 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 ||| ||||||| |||| |||| ||||||||| || || | | |||||||||| Sbjct 65996 ACGATCTGCTGGCCCACACACGCCGACATCTGCGAGATGTTGATGTACGAGCCCTTGGAG 65937 Query 302863 CCAGCATTTACCAT 302876 || || | ||||| Sbjct 65936 CCTGCCGTCACCAT 65923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817034270110