Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 140 3e-28 seq1 140 3e-28 >seq12 Length=1432871 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || | |||||||| ||||| || | || || || | || Sbjct 1192949 ATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTCC 1192890 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || ||||| || || ||||| Sbjct 1192889 GACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 1192830 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||| |||||||| |||| |||| || || ||| Sbjct 1192829 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTACAAC 1192770 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| ||| ||||| | || || Sbjct 1192769 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 1192723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566 || ||| |||||||| || | |||| | || ||||| |||||| || || || Sbjct 862162 GATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAA 862221 Query 138567 CGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAG 138626 ||||||| | |||| |||||| | || | || |||||||| ||||||||||| Sbjct 862222 ACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAG 862281 Query 138627 AGAATTCCGTAAACCGTGAAGCTTG--ATTCGTT-CCTTGAGCGACGACCAGTCCCACAA 138683 ||| || | | ||| | |||| | || | |||| || | ||||||||||| Sbjct 862282 AGAGTTTCTAAGACC---AGTCTTGGCAATCTTAGCCTTCAGAGTATCCCAGTCCCACAG 862338 Query 138684 ATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC 138726 ||| |||| ||||||||||||||||| || |||| || ||| Sbjct 862339 ATCCGTAGGCTTTTTGTTCCACATATCATATTGTAGAATACCC 862381 >seq1 Length=1856900 Score = 140 bits (154), Expect = 3e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || | || ||||| ||||| || | || || || | || Sbjct 768035 ATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTCC 768094 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||| || || || ||||| || || |||||| Sbjct 768095 GATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGATCAA 768154 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||| |||||||| |||| |||| || || ||| Sbjct 768155 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAAC 768214 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 ||||| |||||||| || || |||||||| ||| ||||| | ||||| | ||||||| Sbjct 768215 ATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGGTATCATTGAGCCA 768274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897431288400