Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq12 140 3e-28 seq1 127 2e-24 seq25 89.7 4e-13 >seq12 Length=1432871 Score = 140 bits (154), Expect = 3e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||||||||| || || ||||| || || || || || ||| | || |||| || Sbjct 1192952 AAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 1192893 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || | | | | || || |||||||| || || || || | || ||| Sbjct 1192892 TCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACCAGAT 1192833 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||||||| | || | ||| ||||| ||| ||||||| | || ||| || |||||||| Sbjct 1192832 CAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTAC 1192773 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 ||||| || ||||||||||| | ||| |||| ||||||||| |||| || || || || Sbjct 1192772 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAAGAAG 1192713 Query 107793 AA 107794 || Sbjct 1192712 AA 1192711 >seq1 Length=1856900 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||||||||| || || || || || || || || || ||| | || |||| || Sbjct 768032 AAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCT 768091 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| | | | | || || |||||||| ||||| || || | || ||| Sbjct 768092 TCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGAT 768151 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||| | || | ||| ||||| ||| ||||||| | | ||| || | |||||| Sbjct 768152 CAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTAC 768211 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| ||||| ||||| | ||| |||| ||||||||| |||| || Sbjct 768212 AACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGG 768261 >seq25 Length=1112461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 175/256 (68%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || ||||| || || || || || | || || || Sbjct 696597 ATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCT 696538 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || ||||||||| ||||| ||||| | || || ||| Sbjct 696537 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696478 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||| || |||| |||| | |||| | | || ||||| Sbjct 696477 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 696418 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 |||||||| |||||||| | || |||| | || || |||||| | ||| |||| Sbjct 696417 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTT--GAGGGG--AGGAATGCAAAT 696362 Query 107796 ATTTGTATTTAAAACG 107811 |||| |||||||| Sbjct 696361 CTTTG---TTAAAACG 696349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876654160670