Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq12 131 4e-25 seq25 127 5e-24 seq1 116 9e-21 >seq12 Length=1432871 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| ||||| ||||| ||| ||||| | || || |||||| Sbjct 1192925 ACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAA 1192866 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || ||||| || || || ||| | ||||| || || ||| Sbjct 1192865 AAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAG 1192806 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| || |||||| | || |||||| ||||||| ||||||||||||||| Sbjct 1192805 CAGTTGGAGGATGGCAGAACTTTGTCGGACTACAACATCCAGAAGGAGTCTACTCTTCAC 1192746 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 1192745 TTGGTCTTGAGA 1192734 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | ||||||||||||||| ||||||| || ||||| | |||||| || || Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 ||| |||| |||||| || || ||||| Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGAT 1192820 >seq25 Length=1112461 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || ||||| || ||||| | || || ||| ||||||||| |||| Sbjct 695898 AAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGACACTATCGATAAT 695839 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| || ||||||||| || ||| || || | || || Sbjct 695838 GTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTT 695779 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||| ||||| || | | |||||||| | || |||||||| Sbjct 695778 GCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCA 695719 Query 206365 ACTCTTCACCTTGTT 206379 ||||||||| | ||| Sbjct 695718 ACTCTTCACTTGGTT 695704 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || ||||| || ||||| | || || ||| ||||||||| |||| Sbjct 696126 AAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGACACTATCGATAAT 696067 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| || ||||||||| || ||| || || | || || Sbjct 696066 GTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTT 696007 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||| ||||| || | | |||||||| | || ||||||||| Sbjct 696006 GCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCT 695947 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 695946 ACTCTTCA 695939 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || ||||| || ||||| | || || ||| ||||||||| |||| Sbjct 696354 AAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGACACTATCGATAAT 696295 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| || ||||||||| || ||| || || | || || Sbjct 696294 GTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTT 696235 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||| ||||| || | | |||||||| | || ||||||||| Sbjct 696234 GCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCT 696175 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 696174 ACTCTTCA 696167 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| || || || ||| ||||||||| |||| || |||||| Sbjct 696573 ACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCTGACACTATCGATAATGTTAAGCAA 696514 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||||||| || ||| || || | || || ||||| ||| Sbjct 696513 AAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTTGCCGGTAAG 696454 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||| ||||| || | | |||||||| | || ||||||||||||||||| Sbjct 696453 CAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCTACTCTTCA 696395 >seq1 Length=1856900 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| ||||| ||||| ||| || || | || || |||||| Sbjct 768059 ACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTCCGATACCATTGACAATGTCAAGCAA 768118 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || || || ||| | ||||| || || ||| Sbjct 768119 AAGATCCAGGATAAGGAGGGAATTCCACCTGATCAACAGAGATTGATCTTTGCTGGTAAG 768178 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| || |||||| | || |||||| | ||||| || |||||||||||| Sbjct 768179 CAGTTGGAGGATGGTAGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACTCTTCAC 768238 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 768239 TTGGTCTTGAGA 768250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820345737630