Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq12 131 4e-25
seq25 127 5e-24
seq1 116 9e-21
>seq12
Length=1432871
Score = 131 bits (144), Expect = 4e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| ||||| ||||| ||| ||||| | || || ||||||
Sbjct 1192925 ACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAA 1192866
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || ||||| || || || ||| | ||||| || || |||
Sbjct 1192865 AAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAG 1192806
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| ||||| || |||||| | || |||||| ||||||| |||||||||||||||
Sbjct 1192805 CAGTTGGAGGATGGCAGAACTTTGTCGGACTACAACATCCAGAAGGAGTCTACTCTTCAC 1192746
Query 206374 CTTGTTTTGAGA 206385
| || ||||||
Sbjct 1192745 TTGGTCTTGAGA 1192734
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816
|||||| || | ||||||||||||||| ||||||| || ||||| | |||||| || ||
Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793
Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
||| |||| |||||| || || |||||
Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGAT 1192820
>seq25
Length=1112461
Score = 127 bits (140), Expect = 5e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||||| | || ||||| || ||||| | || || ||| ||||||||| ||||
Sbjct 695898 AAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGACACTATCGATAAT 695839
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||||||||||||||||| || ||||||||| || ||| || || | || ||
Sbjct 695838 GTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTT 695779
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||| |||||||| ||||| || | | |||||||| | || ||||||||
Sbjct 695778 GCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCA 695719
Query 206365 ACTCTTCACCTTGTT 206379
||||||||| | |||
Sbjct 695718 ACTCTTCACTTGGTT 695704
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||||| | || ||||| || ||||| | || || ||| ||||||||| ||||
Sbjct 696126 AAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGACACTATCGATAAT 696067
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||||||||||||||||| || ||||||||| || ||| || || | || ||
Sbjct 696066 GTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTT 696007
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||| |||||||| ||||| || | | |||||||| | || |||||||||
Sbjct 696006 GCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCT 695947
Query 206365 ACTCTTCA 206372
||||||||
Sbjct 695946 ACTCTTCA 695939
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||||| | || ||||| || ||||| | || || ||| ||||||||| ||||
Sbjct 696354 AAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGACACTATCGATAAT 696295
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||||||||||||||||| || ||||||||| || ||| || || | || ||
Sbjct 696294 GTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTT 696235
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||| |||||||| ||||| || | | |||||||| | || |||||||||
Sbjct 696234 GCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCT 696175
Query 206365 ACTCTTCA 206372
||||||||
Sbjct 696174 ACTCTTCA 696167
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| || ||||| || || || ||| ||||||||| |||| || ||||||
Sbjct 696573 ACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCTGACACTATCGATAATGTTAAGCAA 696514
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| || ||||||||| || ||| || || | || || ||||| |||
Sbjct 696513 AAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAGAGGTTGATATTTGCCGGTAAG 696454
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|| |||||||| ||||| || | | |||||||| | || |||||||||||||||||
Sbjct 696453 CAATTGGAAGACGGAAGAACACTTTCTGATTACAATATTCAAAAAGAGTCTACTCTTCA 696395
>seq1
Length=1856900
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| ||||| ||||| ||| || || | || || ||||||
Sbjct 768059 ACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTCCGATACCATTGACAATGTCAAGCAA 768118
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || |||||| || || || ||| | ||||| || || |||
Sbjct 768119 AAGATCCAGGATAAGGAGGGAATTCCACCTGATCAACAGAGATTGATCTTTGCTGGTAAG 768178
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| ||||| || |||||| | || |||||| | ||||| || ||||||||||||
Sbjct 768179 CAGTTGGAGGATGGTAGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACTCTTCAC 768238
Query 206374 CTTGTTTTGAGA 206385
| || ||||||
Sbjct 768239 TTGGTCTTGAGA 768250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820345737630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |