Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq12 145 7e-30 seq25 141 8e-29 seq1 134 1e-26 >seq12 Length=1432871 Score = 145 bits (160), Expect = 7e-30 Identities = 179/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 35496 TCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAA 35555 || ||| || || ||||| | || ||||| ||||| || | ||| |||||| || | Sbjct 1192709 TCTTCTTCTTCTTACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGA 1192768 Query 35556 TGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCT 35615 ||||||| || | ||| |||| | || |||| ||||||||| ||||| ||||| | || Sbjct 1192769 TGTTGTAGTCCGACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCT 1192828 Query 35616 GCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGT 35675 |||| || | || | | ||||||||| |||||||||||| | | | | | |||| Sbjct 1192829 GCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGT 1192888 Query 35676 CGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || || |||||||||| ||||| || ||||| |||||||| || || || || |||| Sbjct 1192889 CGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCA 1192948 Query 35736 TTCTG 35740 || || Sbjct 1192949 TTTTG 1192953 >seq25 Length=1112461 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | ||||| | |||||||| | ||| ||| |||||||| |||||||| | Sbjct 695913 TTCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 695972 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| |||| |||| |||||||| ||||||||||||| ||||||||| | | Sbjct 695973 AAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 696032 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||||||||||| | | | | | ||||| ||||| | Sbjct 696033 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAA 696092 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| | |||||| || || |||||||| ||||| ||||| || ||||||| Sbjct 696093 CCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATTC 696143 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | ||||| | |||||||| | ||| ||| |||||||| |||||||| | Sbjct 696141 TTCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 696200 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| |||| |||| |||||||| ||||||||||||| ||||||||| | | Sbjct 696201 AAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 696260 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||||||||||| | | | | | ||||| ||||| | Sbjct 696261 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAA 696320 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| | |||||| || || |||||||| ||||| ||||| || ||||||| Sbjct 696321 CCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATTC 696371 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || | |||||| | ||||| || | || ||| |||||||| |||||||| | Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| |||| |||| |||||||| ||||||||||||| ||||||||| | ||| Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||||||||| | | | | | ||||| ||||| ||| Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | |||||| || || |||||||| ||||| ||||| || ||||||| Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATTC 695915 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | ||||| | |||||||| | ||| ||| |||||||| |||||||| | Sbjct 696369 TTCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 696428 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| |||| |||| |||||||| ||||||||||||| ||||||||| | | Sbjct 696429 AAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 696488 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||||||||||| | | | | | ||||| ||||| | Sbjct 696489 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAA 696548 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | |||||| || || || || || || |||||||| || ||||| Sbjct 696549 CCTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597 >seq1 Length=1856900 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || ||||| ||||| || | ||| ||||| ||||||||||| || | ||| |||| Sbjct 768252 AATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTA 768193 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || |||| ||||||||| ||||| ||||| | ||| || || | |||| | |||| Sbjct 768192 CCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCC 768133 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 || ||| |||||||||||| | | | | | || ||| || |||||||||| ||| Sbjct 768132 TTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTG 768073 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || ||||||||||| || || || || || |||||| Sbjct 768072 ATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATT 768034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793430952400