Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 315 1e-80 seq23 226 4e-54 >seq12 Length=1432871 Score = 315 bits (348), Expect = 1e-80 Identities = 1342/2096 (64%), Gaps = 37/2096 (2%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||||| ||||||||||| || |||| || |||| || || || ||||| Sbjct 861847 TGTACGTAAGTAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGA 861906 Query 68463 TGTTAGTTTGGAATAACTTGGAT-CGGCTATATGAATATTCATCGATTGACTTTGATCGA 68521 || | ||| | |||| | || | ||| || ||||| |||||| || || Sbjct 861907 AGTCAATTTACCCATAGTTGGTGACTGCAA-ATGGATGTTCATAGATTGAGACTGGCAGA 861965 Query 68522 TGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAG 68581 || | || || ||||| || ||||| || | | ||| |||| ||| ||||||| | Sbjct 861966 TGTATGCGCCCCTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTG 862025 Query 68582 TCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTA---TTTTGAATGGATCCACCAT 68638 || | | | || ||||| | ||| |||| | | | || ||||| || || | Sbjct 862026 TCCTGTACAACTTCTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGT 862085 Query 68639 CGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAA 68698 || || || | ||||| || |||| ||||| | | | || | | | |||| | Sbjct 862086 CGTGAATGATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCA 862145 Query 68699 GGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTAC 68758 | | |||||||| || || ||||| |||| | ||||| | || || ||| Sbjct 862146 ACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAG 862205 Query 68759 TGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCA 68818 ||| ||||||| | | |||| |||| |||| ||| || | ||| || ||||| |||| Sbjct 862206 AGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCA 862265 Query 68819 TAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATT-TTATCTTTTAGATGT 68877 ||||||||||||| | | |||||||||||| || || | | ||| | || ||| Sbjct 862266 TAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-GTCTTGGCAATCTTAGCCTTCAGAGTA 862324 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTA 68937 | ||| ||||| ||||| | || ||||| | ||| ||||||||||| || || Sbjct 862325 TCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATATTGTAGAATACCCTTT 862384 Query 68938 CTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTT 68997 || || || | |||||| | ||||| || || | |||| || | | Sbjct 862385 GAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGAT 862444 Query 68998 GCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT 69057 |||| |||||| ||| ||| | || || || |||| | || || || |||| ||| Sbjct 862445 TCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATCT 862504 Query 69058 AGACTATCGAATGGATAATGTAA--AAGAATAAATGCATCTGCCAATCCCTGAACCCCAA 69115 ||| || || || || | ||| | ||| || | ||| || | ||||| | |||| Sbjct 862505 GGACAGTCAAAAGG-TAGTCTAAGCATGAAGAAG-GTATCAGCAAGACCCTGGATACCAA 862562 Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 | | |||||||| | |||| | || || | || || |||| ||||| ||||| Sbjct 862563 GAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTTC 862622 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT---AGTTTGA 69232 | || |||| || | || ||| || |||||| | || | | | || Sbjct 862623 TGTCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAA--TCTTGTGCAACTTCTC 862680 Query 69233 GAA----AATCA--AATCGTCCATCTATAACA-AACATATTCAGTGCTACAGATGCTAGA 69285 ||| || || ||| ||| | | || |||| | ||| ||| ||| | | Sbjct 862681 GAAGTTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGGCAAACAAATGTTGGC 862740 Query 69286 ----TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341 ||||| || | ||||||| | | | || | | | ||| || | || Sbjct 862741 CAAGTTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTT 862800 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 | ||||||| || |||| || | ||||||||||||| | ||||| || |||||||| Sbjct 862801 CGAAGATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTA 862860 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 | || || || ||||||||||| |||||| || | ||| | ||| | | Sbjct 862861 GATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTG 862920 Query 69462 AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519 ||| || | | | |||| | | | || ||||| || || | || || | ||| Sbjct 862921 AGCCTTCACT--GTTCTTCTTCCACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCG 862978 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || || ||||||| | || || ||| ||| | | ||||| |||| Sbjct 862979 AACTCGTCACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCAC 863038 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 || | || || || |||||||||| ||| ||||||||||||||| ||| | | Sbjct 863039 TTGTCGTTGCTCTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAA 863098 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 || | | | | | || || || || ||| ||| | | ||||| ||| || | ||| Sbjct 863099 TCACGTGCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATA 863158 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 |||| |||||| || || | || || || ||| | || |||| || || || || ||| Sbjct 863159 TCAGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGA 863218 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | ||||| ||||| | || | || | | ||||||||| ||||| || ||| || Sbjct 863219 TCCACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTA 863278 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 ||||| || || | |||||| || | | ||||| || ||| ||||| || Sbjct 863279 CCATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATA 863338 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || || || | ||||| || | |||||| ||||||| || || || ||||| || || Sbjct 863339 CCACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATA 863398 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 |||||| |||| || | || || ||||| ||| | || ||| || ||| Sbjct 863399 GAGTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCA 863458 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG-TTTC 70058 || || || || || ||||| || ||||| || | | || | || | |||| || | Sbjct 863459 TTGAACAACGTTGGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCC 863518 Query 70059 AATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 || | || | ||||| ||| |||||| || | || || | ||| | | || | Sbjct 863519 AACACCTTA-GGAATATCATCAC-CATGAATACCGACGGCCACTCTCATAAGAAGGTGTT 863576 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | |||| ||| | ||| ||| ||| ||||||| || || ||||| ||| || | Sbjct 863577 GTGGTCTTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGA 863636 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCT 70237 | ||||| |||||||| ||||| | |||||| |||| | || || | | ||||| Sbjct 863637 AACCAAAGTAGTTGTAACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCT 863696 Query 70238 TATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTT 70297 ||| | |||| || | ||| | || || || ||||| || | | Sbjct 863697 TATGCTCCATAACAATCTTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCT 863756 Query 70298 TAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCT 70357 | ||||| |||||| ||| ||| || || |||||| || | || || || | || Sbjct 863757 TTGGATTGTAGTAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCT 863816 Query 70358 TGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAG 70417 |||| |||||||| || || | ||| || || | | |||||||||| ||||| ||| | Sbjct 863817 TGTGCAAATTTGAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGG 863876 Query 70418 TACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCC 70472 | || ||| ||||| |||| |||| || | || || || || || ||||| || Sbjct 863877 T-CATGTATGCTGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACC 863931 >seq23 Length=1356690 Score = 226 bits (250), Expect = 4e-54 Identities = 602/909 (66%), Gaps = 17/909 (2%) Strand=Plus/Minus Query 39303 CTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAG 39362 || |||| | |||||| || || ||||| || ||| | ||||| || ||||||| Sbjct 991545 CTCCTTG-GCCATAACACCGGCCTTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAG 991487 Query 39363 TTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttt 39422 | || || |||| || |||||||||||||| || || ||||| || | || || | Sbjct 991486 TCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTTGTGACGTTGTAAACCT 991427 Query 39423 ttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCA 39482 | | |||| ||| | || ||| || || ||| || || | ||| ||||| Sbjct 991426 TCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCAACGTACTGAGCCATCA 991367 Query 39483 TTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT-AGAAACTCTTTTTCG 39541 | || | ||||| || | | |||||| ||||| || | ||||| | ||| || Sbjct 991366 TATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTCCAGAAAGT-TTTCTCA 991308 Query 39542 ATGTCTACGGCCTCTGTTATTATCGA--TGTTACT-ACCTCATCACTCGGTGGATGCAAT 39598 || | || ||||| || || || || || | |||| | || ||||||||| Sbjct 991307 ATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTA---CTTGGTGGATGCTTC 991251 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 || || |||| | ||| || || || |||||| ||||||||||| | || | Sbjct 991250 AAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGC 991191 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 |||||||| || || || || ||||| | ||| | ||| || | ||| || |||| ||| Sbjct 991190 TCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCA 991131 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT-- 39776 || |||||||| || || | ||||| | || ||||| ||||| | |||||| | | Sbjct 991130 AACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATAC 991071 Query 39777 -AACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 || |||||| | |||||| || ||||| ||| |||| ||| | | || Sbjct 991070 AAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCTCCTTAATAGGTGGA 991011 Query 39836 ATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCT 39895 ||||| | || ||||| || | || | || | | || | | ||| || || Sbjct 991010 ATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCG 990951 Query 39896 ATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 || || || ||| | || || |||||||| |||| | ||||| || || || || Sbjct 990950 ATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAG 990891 Query 39956 CATCTTGCTTCAGTAATTTGTACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCAC 40014 |||||| |||| | || |||| || | ||| | | | |||||||| |||| || Sbjct 990890 GCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT-TCTGTGCCAAATTCTCATCGAC 990832 Query 40015 TATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG 40074 || ||||| ||||||||| || ||||| ||| | || || ||| | |||| || Sbjct 990831 AATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGC 990772 Query 40075 TGTCAATTT---ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131 ||| || ||||||||| | | ||| ||||| | ||| | || || || ||||| Sbjct 990771 ATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCA 990712 Query 40132 AAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || || ||||| ||||| |||||||| | |||||||||| || || || || || || Sbjct 990711 GAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAACAT 990652 Query 40192 AACAAATCT 40200 || ||||| Sbjct 990651 CACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908542409200