Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq23 131 1e-25 >seq1 Length=1856900 Score = 132 bits (146), Expect = 4e-26 Identities = 289/430 (67%), Gaps = 16/430 (4%) Strand=Plus/Plus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| || || ||| ||||| || |||||||| ||| || || ||||| ||| | Sbjct 590547 TATGGACCTCCAGGTACAGGAAAGACTTTAATTGCTAGACAAATTGGTAAAATGTTAAAT 590606 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | || | || |||||||| ||||||||||||||||| |||||||| ||| Sbjct 590607 GCTAAGGAGCCA---AAAATTGTCAATGGTCCTGAAATCTTGTCCAAATATGTTGGTTCT 590663 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 |||||||| || | || ||||||| || || || | |||| | || | |||| Sbjct 590664 TCGGAAGAGAACATTAGAAATTTGTTTAAAGATGCAGAGGCAGAATACAAGCAGAAAGGG 590723 Query 19537 CGCAAAAGT--TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | || || | || ||||| ||| | || || ||||| | || | |||||| Sbjct 590724 G--ATGCGTCGTCCCTTCATATTATTATATTTGACGAGTTGGATTCTATATTCAAGCAAC 590781 Query 19595 GAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 | ||||| || || | ||| || |||| ||| || |||||| | || | | Sbjct 590782 GTGGTTCGAGAGGTGATGGTACTGGTGTTGCCGACAATGTGGTGAATCAATTGCTTGCTA 590841 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | || |||||| | || || || |||||| |||| ||||| |||||||||||| || Sbjct 590842 AGATGGATGGTGTTGATCAGCTAAACAATATTCTAGTCATTGGAATGACTAATAGAAGGG 590901 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | ||||| || || ||| | || || || | || ||| | || | |||||| | | Sbjct 590902 ATTTAATTGATGAAGCATTACTTCGTCCTGGAAGATTTGAAGTGCAGGTTGAAATTCATT 590961 Query 19769 TACCCGATGA 19778 |||| ||||| Sbjct 590962 TACCTGATGA 590971 >seq23 Length=1356690 Score = 131 bits (144), Expect = 1e-25 Identities = 382/584 (65%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || ||||| || |||| ||||||||||||||||| || || |||| || || | Sbjct 990653 TGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCT 990712 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC----ATTAAAA 43822 |||| || || || | ||| | | || || || | | |||| || || || Sbjct 990713 GGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGACAAGATGAATG 990772 Query 43823 CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 ||| | || | | | || || ||| || ||||| || ||||| || || || || Sbjct 990773 CCA-ATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTCAGATGGTATT 990831 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| |||| ||||||| ||| | | | || || ||||| || ||| || Sbjct 990832 GTCGATGAGAATTTGGCACAGAACTTTATGAAGCAGGTGCAGTTACCTGAGGCAAGAGCC 990891 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| || || ||| | || || || || || || | || ||| |||| Sbjct 990892 TTCTATGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACTTATTCCCTTTTGATC 990951 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || || |||| || | | ||| | ||||| ||||| || | ||| | Sbjct 990952 GAGACCTATATCACTGACAAGAAAGAGTCCGACTACTTGTTCAATGCCATCCATACAATT 991011 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA--ATGATTCTT 44120 || | ||||| | || || ||||| | | ||||||||| ||| ||||| ||| Sbjct 991012 CCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAA--CAATGATGATGCTT 991069 Query 44121 T---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | || || || | || || ||||| | | ||||| | || || || ||||||| Sbjct 991070 TGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTTTTCTCTGGATCGT 991129 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| |||| || ||||| ||||| ||||||||||||| || | ||||| || || | Sbjct 991130 TTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTTACGTTCTCTAACG 991189 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || | || | | ||||| || ||||| ||||||||| ||| Sbjct 991190 AGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATGC 991233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455854680150