Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq25 98.7 8e-16
seq12 93.3 4e-14
>seq25
Length=1112461
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | ||||| | |||||||| | ||||| ||||||||||||||||| ||
Sbjct 695915 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 695974
Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| |||| | ||||||| | || |||||||| | || | | ||| || || || ||
Sbjct 695975 AGTGTTCTTC-CGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696033
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| || || ||||| ||||| | || | | || | |||||| | | ||||||
Sbjct 696034 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696093
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| || || | || ||||||| ||||| ||||||||||||||
Sbjct 696094 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696141
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | ||||| | |||||||| | ||||| ||||||||||||||||| ||
Sbjct 696143 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 696202
Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| |||| | ||||||| | || |||||||| | || | | ||| || || || ||
Sbjct 696203 AGTGTTCTTC-CGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696261
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| || || ||||| ||||| | || | | || | |||||| | | ||||||
Sbjct 696262 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696321
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| || || | || ||||||| ||||| ||||||||||||||
Sbjct 696322 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696369
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
|||||| | |||| | ||||| || | || || ||||||||||||||||| ||
Sbjct 695686 GCCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGA 695745
Query 27080 CA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| |||| | ||||||| | || |||||||| | || | | ||| || || || |
Sbjct 695746 AAGTGTTCTTC-CGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 695804
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || || ||||| ||||| | || | | || | |||||| | | |||||
Sbjct 695805 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAA 695864
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||||| || || | || ||||||| ||||| ||||||||||||||
Sbjct 695865 CCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 695913
>seq12
Length=1432871
Score = 93.3 bits (102), Expect = 4e-14
Identities = 172/252 (68%), Gaps = 3/252 (1%)
Strand=Plus/Plus
Query 130732 AAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791
||||||| | | || | | ||||| ||| || || |||||||| || || | |||
Sbjct 862135 AAGATCTCTCAACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTG 862194
Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851
|| ||||| ||||| ||||| || ||||||| | || | || || | ||||
Sbjct 862195 ATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGA 862254
Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911
|| || ||||| |||||| || ||||| || | |||||| | | | || ||
Sbjct 862255 AGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGC 862314
Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTG 130971
||||| |||||| ||||| ||| ||||| || ||||||||||||||| ||||
Sbjct 862315 CTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT---TTGTTCCACATATCATATTG 862371
Query 130972 TAGTATGCCTTT 130983
||| || || ||
Sbjct 862372 TAGAATACCCTT 862383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424934244633360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |