Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25 98.7 8e-16 seq12 93.3 4e-14 >seq25 Length=1112461 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| | |||||||| | ||||| ||||||||||||||||| || Sbjct 695915 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 695974 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||||| | || |||||||| | || | | ||| || || || || Sbjct 695975 AGTGTTCTTC-CGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696033 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||| | || | | || | |||||| | | |||||| Sbjct 696034 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696093 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || | || ||||||| ||||| |||||||||||||| Sbjct 696094 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696141 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| | |||||||| | ||||| ||||||||||||||||| || Sbjct 696143 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 696202 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||||| | || |||||||| | || | | ||| || || || || Sbjct 696203 AGTGTTCTTC-CGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696261 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||| | || | | || | |||||| | | |||||| Sbjct 696262 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696321 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || | || ||||||| ||||| |||||||||||||| Sbjct 696322 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| | |||| | ||||| || | || || ||||||||||||||||| || Sbjct 695686 GCCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGA 695745 Query 27080 CA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||||| | || |||||||| | || | | ||| || || || | Sbjct 695746 AAGTGTTCTTC-CGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTG 695804 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||| | || | | || | |||||| | | ||||| Sbjct 695805 GAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAA 695864 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || | || ||||||| ||||| |||||||||||||| Sbjct 695865 CCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 695913 >seq12 Length=1432871 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/252 (68%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 130732 AAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791 ||||||| | | || | | ||||| ||| || || |||||||| || || | ||| Sbjct 862135 AAGATCTCTCAACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTG 862194 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 || ||||| ||||| ||||| || ||||||| | || | || || | |||| Sbjct 862195 ATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGA 862254 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 || || ||||| |||||| || ||||| || | |||||| | | | || || Sbjct 862255 AGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGC 862314 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTG 130971 ||||| |||||| ||||| ||| ||||| || ||||||||||||||| |||| Sbjct 862315 CTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT---TTGTTCCACATATCATATTG 862371 Query 130972 TAGTATGCCTTT 130983 ||| || || || Sbjct 862372 TAGAATACCCTT 862383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934244633360