Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq12 219 5e-52 seq26 134 2e-26 seq28 87.8 2e-12 >seq12 Length=1432871 Score = 219 bits (242), Expect = 5e-52 Identities = 1120/1756 (64%), Gaps = 61/1756 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||| | || | ||||| | || | ||||| |||| | || Sbjct 861857 TAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 861916 Query 110429 GACATCGTTGG--ACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA-GCGC 110485 ||| ||||| ||| ||| || ||||||| |||| ||| ||| | |||| Sbjct 861917 CCCATAGTTGGTGACTGCAAATG--GATGTTCATAGATTGAGACTGGCAGATGTATGCGC 861974 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 ||| | || |||||| | |||||| |||| ||| ||||||||||| | || Sbjct 861975 CCCTATCA-GCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTAC 862033 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | |||||||| | ||| || | | || | ||||| || ||||| | | | Sbjct 862034 AACTTCTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATG 862093 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 |||| | |||||| | | | ||| | || || | | || || | | | || Sbjct 862094 ATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAA 862153 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 || || || || ||||| || || ||||||| | |||||||| | ||| || Sbjct 862154 GGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAAT 862213 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 ||||| || ||||| |||| ||||| || || | || || || || ||||| |||||| Sbjct 862214 GGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCC 862273 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | ||||||| ||| | |||||| ||| || |||| ||| ||||||||| Sbjct 862274 ACCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGCCTTCAGAGTATCCCAGTCC 862333 Query 110846 TAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903 | || | | || || |||| |||| ||| | || || | || | || || | Sbjct 862334 CACA-GATCCGTAGGCTTTTTGTTCC-ACATATCATATTGTAGAATACCCTTTGAAGCTG 862391 Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 110963 |||| || ||| | || | ||| | ||| | | |||| | | | |||||| Sbjct 862392 GAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCA 862451 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA- 111022 | |||||||||| ||| ||||| || || || | |||| || ||||| | Sbjct 862452 ATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGC---ATCTGGAC 862508 Query 111023 --TCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||||| | |||| | || | || ||| || ||||| || | ||| | | || Sbjct 862509 AGTCAAAAG-GTAGTCTAAGCATGAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCA 862567 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTG 111136 |||||||||| || ||| || || || || || |||| || ||||| |||||||| Sbjct 862568 ATAGGTCTGTTTCTCATGTTGGAGTTACGGGC---CTCAGGAACTGGATAGTAATTTCTG 862624 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 ||||| || ||||||| || |||||||| || || || | || | || || | Sbjct 862625 TCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAATCTTGTGCAACTTCTCGAAG 862684 Query 111197 TCAAAAGTGCGAGTCTCTTCAT-TGACATA-CTTTGGAAGGG---CGATTGATG-CCAAA 111250 | || || | || |||| |||| | | || ||| | | || || |||| Sbjct 862685 TTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGGCAAACAAATGTTGGCCAAG 862744 Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 || || ||| | |||||| | | |||||| | || || || ||||| ||| Sbjct 862745 TTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAA 862804 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || ||||| ||||| || |||||||| | || || ||||||||||||| | Sbjct 862805 GATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATC 862864 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGC 111429 ||| | || || || || || ||||| | | | ||| | ||| ||| || | | | Sbjct 862865 ATGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCC 862924 Query 111430 TGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | || || || || |||| || |||||| ||||| | || ||| Sbjct 862925 TT---CACTGTTCTTCTTCCACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCGAAC 862981 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA-AGAGACCATTG 111546 || ||||| | || |||||||||||||||| ||||| ||||| || || Sbjct 862982 TCGTCACCGTAAACATCTGAGAGACCTGGTGCCT--------CAGAAGGAGAGAACAATG 863033 Query 111547 ACCACCT-TC------CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || ||| || |||||||| || | ||||||||||| || | || || Sbjct 863034 TCCACTTGTCGTTGCTCTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAA 863093 Query 111600 AGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 | | ||| | | || ||| ||| || | ||| || || || | || | || || Sbjct 863094 ACAAATCACGTGCA-CGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCG 863152 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCC 111714 | |||||| || ||||| ||||| | || | || || | || || | | || Sbjct 863153 AAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTG-TTACC 863211 Query 111715 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATC 111774 | |||||| ||||| | || || ||| || || |||| ||| ||||| ||||| | Sbjct 863212 ACCTTGATCCACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTT 863271 Query 111775 TGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 ||| |||||| || || |||| || | ||| | | | || ||||| | Sbjct 863272 GGATGTACCATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAG 863331 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 |||||||| ||||| ||| || || ||||||| | | ||| | |||||||| Sbjct 863332 ACCAATACCACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACC 863391 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | || ||||| || || | || | | |||||| |||||||| || | ||| || Sbjct 863392 TTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGT 863451 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 112013 |||||||||||| | ||||||| ||| || |||| || || | |||||| ||| | Sbjct 863452 ACCAGCATTGAACAACGTTGGTGATGCATGTGTGAA-GTATCTCTTTGACATCAAGTCAT 863510 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 ||| ||||| || | ||| || || || || || |||| || || | ||| | | Sbjct 863511 ATGATTCCAACACCTTAGGAATATCATCACCATGAATACCGACGGCCACTCTCATAAGAA 863570 Query 112074 TGTACTGTGGGGTTTC 112089 || ||||| |||| Sbjct 863571 GGTGTTGTGGTCTTTC 863586 >seq26 Length=1546578 Score = 134 bits (148), Expect = 2e-26 Identities = 302/443 (68%), Gaps = 12/443 (3%) Strand=Plus/Minus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| || || |||| ||||| || |||||| | || ||| || | ||||| Sbjct 307262 TTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAGAGATTGGAC 307203 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 ||| || || || | ||||| || || |||| ||||||| |||||| || || Sbjct 307202 GACTTGATGGTTCCAAGGTTCTTCTGATTCGACTTCGCATTGCACGAATCCTTATAAAGG 307143 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCT 111430 | | | ||||| || ||||| ||||| || | ||||| || ||| || | | ||| Sbjct 307142 AGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTCCCACACCTTGCGGGCC 307083 Query 111431 GGTACAA-TGGCGTTGGC-CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 | ||| || ||| | ||| || || ||||||| |||||| |||| |||||||| Sbjct 307082 --TTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGGATTCAAACT 307025 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC--CAT-T 111545 | |||| ||| || || |||||||| ||| | |||||||||||| || | Sbjct 307024 CGGGACCCCATTTGTCTGATAGTCCTGGTGC--TGTATCCTCAGAAAAGAGACTCCACAT 306967 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 | | ||| ||| | ||| ||||||| ||||| |||||||||| | ||||||||| Sbjct 306966 CTCGTCATTCTTCA-CACGCCTCATGAACAGGTCCGGAATCCACAACGCATAAAAGAGAT 306908 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATA 111664 | || ||| || || | || ||||| || | | || ||||| |||| ||| Sbjct 306907 CCCTTGCCCGCATTTCCTCCTTGCCGTGGTTCT-TCTTGAGGTCGAGGAATTCCAGAATA 306849 Query 111665 TCCGCGTGCCATGGCTCAAGATA 111687 ||||| ||||| ||||||||||| Sbjct 306848 TCCGCATGCCAGGGCTCAAGATA 306826 >seq28 Length=771433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| | || |||||| |||| || | || ||||||||||||||||| ||||| Sbjct 288846 TATGGAAGAGTGGCACCAAGATCTGGATTAGCGGTGAAGCATGGTATTCATACCGGTGCT 288905 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||| ||||| | ||||| | ||| ||||| || || || |||||||| | | || Sbjct 288906 GGTGTCATTGACTCAGACTACAGAGGAGAAGTTAAGGTTGTACTCTTCAACTTCAGCGAT 288965 Query 164724 AAAGACTTTGAG-GTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774 ||||| ||| || | || || ||| | || |||||||| | |||||| Sbjct 288966 AAAGA-TTTCAGCATTAACGCGGGTGATAGAATTGCACAACTCATTCTTGAG 289016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031764488000