Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12 269 3e-67 seq26 109 6e-19 >seq12 Length=1432871 Score = 269 bits (298), Expect = 3e-67 Identities = 1130/1753 (64%), Gaps = 53/1753 (3%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| || | | ||| | |||||| ||||||||||||| || || ||| | Sbjct 863586 GAAAGACCACAACACCTTCTTATGAGAGTGGCCGTCGGTATTCATGGTGATGATATTCCT 863527 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 || ||||| |||| ||| |||||| | || || |||| || ||| ||||||| Sbjct 863526 AAGGTGTTGGAATCATATGACTTGATGTCAAAGAGATAC-TTCACACATGCATCACCAAC 863468 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 | |||||||||||||| ||| | || || ||||| |||||| | | || | || Sbjct 863467 GTTGTTCAATGCTGGTACTCCACGCCCTCAGATGTCATCATGCTTCTTAGTTGCAATGAA 863408 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 || ||||| || | |||||||| | ||| | | ||||||| || || ||| Sbjct 863407 AGATGACTCTATTGAAGGTATCTACGATACTTTGAAACAGTGTGCTTTGATTTCTAAGAC 863348 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 ||||| |||||||| | ||||| || | | | ||| | || |||| || Sbjct 863347 TGCTGGTGGTATTGGTCTTCACATTCACAACATTCGTTCCACTGGTTCGTATATTGCCGG 863288 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || |||||| ||| | ||||| ||||| ||| |||| || || ||| || || | Sbjct 863287 TACTAATGGTACATCCAACGGTATAATTCCGATGGTTCGTGTGTTCAACAGTACTGCTAG 863228 Query 104575 CTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCAT 104630 ||||| |||||| ||| | | || || | || || | || | ||||| | Sbjct 863227 ATATGTGGATCAAGGTGGTAA-CAAGAGACCAGGTGCCATTGCTATTTACTTGGAGCCTT 863169 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| || |||||| | || || | || | | || || ||| | |||||| | Sbjct 863168 GGCATGCTGATATCTTCGACTTTATCGATATCAGAAAGAATCATGGTAAAGAGGAGATTC 863109 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | ||| || ||| | || | ||||| |||||||||||| | || |||||| | || ||| Sbjct 863108 G-TGCACGTGATTTGTTTCCAGCTCTTTGGATTCCAGATTTATTTATGAAGCGTGTGGAG 863050 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 | | ||| ||| | | || | ||| ||||||| |||||||| |||| Sbjct 863049 AGCAACGACAAGTGGACATTGTTCTCTCCTTCTGAGGCACCAGGTCTCTCAGATGTTTAC 862990 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| ||||| || | ||||| |||||| ||||||| || | | || Sbjct 862989 GGTGACGAGTTCGAGAAATTGTACACTCGTTACGAGAAAGAAGGACGTGGAAGAAGAACA 862930 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 ||| ||| | || | | ||| | ||| | || |||| || || ||||||||||| Sbjct 862929 GTGAAGGCT-CAGAAGTTATGGTACCAGATTTTGGAGGCTCAGACAGAAACTGGTACACC 862871 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||| | ||||| || || ||||| |||||||||||| ||||| |||||| || Sbjct 862870 TTTCATGATCTACAAGGATGCTTGTAATAGAAAGAGTAATCAGAAGAACTTGGGTACCAT 862811 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTG--GAATTTACAGACAAAGATGAGACGGCT 105046 ||| ||| || || ||| | | | ||| || | | ||||||| | | Sbjct 862810 CAAATCTTCGAA-CT-TGTGCTGTGAGGTTGTCGAGTACTCCTCTCCAGATGAGGTTGGT 862753 Query 105047 GTGTGTAACCTCG-CATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACAT 105104 ||||||||| | | || || | | | | || | ||| || |||| || | ||| Sbjct 862752 GTGTGTAACTTGGCCAACATTTG-TTTGCCTGCCTTTGTTGAGTCAGATGAGGA--TCAT 862696 Query 105105 T--TG-----ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | || | | || || | ||| | |||| ||| ||| ||| ||| ||||| Sbjct 862695 TGCTGGTTCAACTTCGAGAAGTTGCACAAGATTACTAAAGTTGTTACCCGTAACTTAAAC 862636 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGA 105214 | |||||||| ||||||| || || || |||| || ||||| || || |||||| Sbjct 862635 CGTGTTATTGACAGAAATTACTATCCAGTTCCTGAG---GCCCGTAACTCCAACATGAGA 862579 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGAT---GTATTCATTCTTTGTCGC 105271 || | || |||| ||| ||| | |||||||| || ||| | ||||| ||| | | Sbjct 862578 AACAGACCTATTGCTCTTGGTATCCAGGGTCTTGCTGATACCTTCTTCATGCTTAGACTA 862519 Query 105272 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTAT 105331 | | ||||| | || || ||| | || | |||||||||||| ||||| Sbjct 862518 C---CTTTTGACTGTCCAGATGCACGGGAGCTTAACATTCAGATATTTGAGACCTTGTAT 862462 Query 105332 CACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCT 105389 ||||| || | ||| || | || || | || | || || ||| | ||| | || | Sbjct 862461 CACGCTGCATTGGAG--GAATCCAACCAGCTTGCTGTGGAAGAGGGTACTTATCAGACAT 862404 Query 105390 TTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA 105449 ||| || |||||||||||| | || | || |||| |||||||||| | || | | Sbjct 862403 ATGAAGGCTCTCCAGCTTCAAAGGGTATTCTACAATATGATATGTGGAACAAAAAGCCTA 862344 Query 105450 AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 105509 | || | |||||||| |||| |||| || ||| |||||| | ||| Sbjct 862343 CGGATCTGTGGGACTGGGATACTCTGAAGGCTAAGATTGCCAAGACTGGTCTTAGAAACT 862284 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 ||| | |||| || ||||| || || || || | || || ||||| |||| |||| Sbjct 862283 CTCTTTTGGTGGCACCTATGCCGACTGCTTCTACTTCCCAGATTATGGGTTATAACGAAT 862224 Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGA 105629 | || ||||| | ||| | |||||||||| ||||||| || || || || || || Sbjct 862223 GTTTCGAACCATTCACCTCTAACATCTATCAGAGAAGAGTTCTTGCTGGTGAATTCCAGA 862164 Query 105630 TTGTCAA--CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 | || || | ||| | || || || | || || || | ||| | | | || Sbjct 862163 TCGTTAATCCTTACATGT--TGAGAGATCTTATTGACATGGGAATATGGAACGATGCAAT 862106 Query 105688 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGA 105747 |||| | |||| | | | ||||| ||||| || | | |||| || | Sbjct 862105 GAAGAACTTCATCATTCACGACAACGGTTCTATTCAGAACTTGCCAAACGTTCCCGATAA 862046 Query 105748 AATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGC 105807 || |||||||||||| | ||||||||||| || |||| |||||| | ||||| Sbjct 862045 GATCAAGAAGTTGTACAGGACAGTTTGGGAGATTTCTCAGAAGTCTGTCATCGTTATGGC 861986 Query 105808 CGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGT- 105865 || ||| | || ||| | ||| || |||| |||||| || ||| ||| Sbjct 861985 TGCTGATAG-GGGCGCATACATCTGCCAGTCTCAATCTATGAACATC--CATTTGCAGTC 861929 Query 105866 -CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 105924 ||||| ||| || | |||| |||||| | || | ||||||||||| | || || Sbjct 861928 ACCAACTATGGGTAAATTGACTTCCATGCACTTTTATGGCTGGAAGAAGGGCTTGAAGAC 861869 Query 105925 GGGGATGTATTAC 105937 || ||||| ||| Sbjct 861868 AGGTATGTACTAC 861856 >seq26 Length=1546578 Score = 109 bits (120), Expect = 6e-19 Identities = 537/840 (64%), Gaps = 31/840 (4%) Strand=Plus/Plus Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677 ||||||||||| ||||| |||||||| |||| ||||| || | ||||| || Sbjct 306826 TATCTTGAGCCCTGGCATGCGGATATTCTGGAATTCCTCGACCTCAAGAAGAACCACGGC 306885 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | ||||| |||| | |||||||| | || | |||||||| || || |||||| Sbjct 306886 AAGGAGGAAATGCGGGCAAGGGATCTCTTTTATGCGTTGTGGATTCCGGACCTGTTCATG 306945 Query 104738 AAGAGAGTTGAGGAGAGTGGCAAT-TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCT 104796 | | | | ||| || | | || ||| |||||||| | || | ||||| || || Sbjct 306946 AGGCGTG-TGAAGAATGACGAGATGTGGAGTCTCTTTTCTGAGGATACAGCACCAGGACT 307004 Query 104797 CTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 || || |||| ||||||||| |||| |||||| ||||||| ||||||| | Sbjct 307005 ATCAGACAAATGGGGTCCCGAGTTTGAATCCCTGTACACACAGTACGAAAAAGAAGG-CC 307063 Query 104857 GGCGACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || || || | | || || | | |||||| | ||||| | ||||| |||| Sbjct 307064 GGTATCTACGGCAGTTGAAGGCCCGCAAGGTGTGGGAGAGGATTCTTTATTCTCAGACCG 307123 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 |||| || || || | | | ||||| || || | || || ||| ||||| |||| Sbjct 307124 AGACAGGAACGCCTTTCCTCCTTTATAAGGATTCGTGCAATGCGAAGTCGAATCAGAAGA 307183 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 | | || |||||| ||||||||||| ||| | | || | || ||| | Sbjct 307184 ACCTTGGAACCATCAAGTCGTCCAATCTCTGCTGCGAAGTTGTCGAGTACTCATCCAAGG 307243 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 | |||| || ||||| ||||| | || | | | || | || |||||| || || Sbjct 307244 ACGAGATCGCCGTGTGCAACCTTGGCTCTGTTGGGTTGCCGATGTTTGTGGA-GGAG-GA 307301 Query 105096 CAAAGAC----ATTTGATTAT-------GAAAAACTCCACGAAGTTACGAAAACTGTCAC 105144 || ||| | || | | || || |||||| | || |||| | || Sbjct 307302 AAACGACGGTACTAGGAGTTTCAACCTGGAGAAGCTCCACCAGGTGGTGAAAGTTCTCGT 307361 Query 105145 CAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAG-ACTGCTCGTAAAT 105203 || ||||| ||| | ||||| ||| | ||||| ||||| | ||| | | | Sbjct 307362 GAAGAACCTCAACCGGGTTATCGATGTGGGTGCATACCCGCTTGAGCAGTGC-AGAACGT 307420 Query 105204 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG---TATTCA 105260 | |||| ||| || ||||| |||| |||||||||| || | || |||| | |||| Sbjct 307421 CAAATACGAGGCATCGTCCGATTGCAGTCGGTGTTCAAGGATTAGCAGATGCTTTCTTCA 307480 Query 105261 TTCTTTGTCGCCACGCATTTG--ATTCCG-ACGAAGCGAAGGAAATCAATGCGCGCATAT 105317 || | | | |||||| | |||| || |||| | ||| || || | Sbjct 307481 GGCTGAGGTGTC---CATTTGGAAGTCCGTACTCCCGGAAGTTGAACAA---GCAAATCT 307534 Query 105318 TTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTC 105377 || |||| || || || || || |||||| | | |||||||| || || || | Sbjct 307535 TTCAGACGATCTACCATGCAGCCCTTGAGCAGTCTGTGGAGTTGGCTCAGAAAGACGGCC 307594 Query 105378 CATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 ||||| || ||||| || || |||| || ||||| || ||||| | ||||||||||| Sbjct 307595 CATATTCGACGTTTGAAGGCTCGCCAGGCTCGCAAGGTGTTCTTCAGTATGATATGTGGG 307654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260581277200