Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 >seq12 Length=1432871 Score = 111 bits (122), Expect = 2e-19 Identities = 659/1045 (63%), Gaps = 33/1045 (3%) Strand=Plus/Plus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||| || || |||||||| || ||||| | ||||||||||| || || | |||||| Sbjct 861846 GTGTACGTAAGTAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGG 861905 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | || || ||| | | || || || |||||| | || || |||||| || Sbjct 861906 AAGTCAATTTACCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGA 861965 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 |||| || || | || || ||||| ||||||| ||||| || | ||||||||| | | Sbjct 861966 TGTATGCGCCCCTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTG 862025 Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGC--GCT-TGTACGCTCCCACCGG 78424 ||| ||| | ||| | || || | | || || | | || | || | Sbjct 862026 TCCTGTACAACTTCTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGT 862085 Query 78425 CTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATT--GATCTTCTGAAGATCCCG 78482 | | | || ||||| ||| | |||||| ||| || | |||||| | Sbjct 862086 CGTGAATGATGAAGTTCTTCATTGCATCGTTCCA--TATTCCCATGTCAATAAGATCTCT 862143 Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 | || || | |||| || ||| || || || || | | | | |||||||| Sbjct 862144 CAACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTT 862203 Query 78543 GGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | ||| | || |||||| ||||| | ||||| ||||||| || || || ||||| Sbjct 862204 AGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGG 862263 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG---ATCTCGACCTTTAG 78659 ||| ||||| |||| ||||| || | ||||||| |||||| |||| |||| || Sbjct 862264 CATAGGTGCCACCAAAAGAGAGTTTCTAAGACCA---GTCTTGGCAATCTTAGCCTTCAG 862320 Query 78660 ------GCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACC 78713 | |||||| | || | | | | |||||| || ||| || ||||| Sbjct 862321 AGTATCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATATTGTAGAATACC 862380 Query 78714 CTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA 78773 || || || || || || | | |||| |||| ||||| ||| || || | | Sbjct 862381 CTTTGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTT 862440 Query 78774 TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833 || || || || ||||| |||| | ||| || || |||| ||||| || || Sbjct 862441 GGATTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGC 862500 Query 78834 CT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892 | ||| | ||| || | || | ||||| | |||| ||| || || ||||||| | Sbjct 862501 ATCTGGAC-AGTCAAAAGGTAGTCTAAGCATGAAGAAGGTATCAGCAAGACCCTGGATAC 862559 Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952 | | ||| || |||| || | ||||||| || |||||| | || || | | Sbjct 862560 CAAGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAAT 862619 Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGG 79012 | | || || || ||||| | |||||| || || || ||| | || || ||| || Sbjct 862620 TTCTGTCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAATCTTGTGCAACTTCT 862679 Query 79013 CGA-----AATCA-AAATGAT-TTCCTTTGA-TGAAAGTCGGTAGGCACAGCGAT----G 79060 ||| || || |||||| || | ||| | || || ||||| | || | Sbjct 862680 CGAAGTTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGGCAAACAAATGTTGG 862739 Query 79061 CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAAT 79120 ||| ||| ||||| | ||| || || || ||||| | || |||||| | Sbjct 862740 CCAAGTTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGT 862799 Query 79121 TAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGT 79180 | || || |||||||| || | ||||||||| || ||||| ||||| || ||||||| Sbjct 862800 TCGAAGATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGT 862859 Query 79181 AGCACATGTACGGCGTCCCGGTCTC 79205 || |||| | || || || || || Sbjct 862860 AGATCATGAAAGGTGTACCAGTTTC 862884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524594303200