Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-21 >seq12 Length=1432871 Score = 118 bits (130), Expect = 1e-21 Identities = 321/481 (67%), Gaps = 8/481 (2%) Strand=Plus/Minus Query 53249 TACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGG 53307 || ||||| ||| | || || ||||| || || || | ||||| ||||||| ||||| Sbjct 863511 TATGACTTGATGT-CAAAGAGATACTTCACACATGCATCACCAACGTTGTTCAATGCTGG 863453 Query 53308 TACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 ||| | |||||||||||| |||||| | || || ||||| |||||||| || || Sbjct 863452 TACTCCACGCCCTCAGATGTCATCATGCTTCTTAGTTGCAATGAAAGATGACTCTATTGA 863393 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 || |||||||| || | || ||||||| || || ||| | |||||||| || Sbjct 863392 AGGTATCTACGATACTTTGAAACAGTGTGCTTTGATTTCTAAGACTGCTGGTGGTATTGG 863333 Query 53428 TATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | | ||| | | | ||| | ||| | | || | || || || || || Sbjct 863332 TCTTCACATTCAC-AACATTCGTTCCACTGGTTCGTATATTGCCGGTACTAATGGTACAT 863274 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || || | || ||| | || || ||||||| || || | || || | || | Sbjct 863273 CCAACGGTATAATTCCGATGGTTCGTGTGTTCAACAGTACTGCTAGATATGTGGATCAAG 863214 Query 53547 GTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 ||||| ||| | | ||| | | || || || ||| | ||||| ||||| || || || Sbjct 863213 GTGGTAACAAGAGACCAGGTGCCATT-GCTATTTACTTGGAGCCTTGGCATGCTGATATC 863155 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCT 53664 | || ||| |||| | | |||||| ||| | || ||||| || ||| ||||| | Sbjct 863154 TTCGACTTTATCGATATCAGAAAGAATCATGGTAAAGAGGAGATTCG-TGCACGTGATTT 863096 Query 53665 GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 |||| ||||||| |||||||| || | || ||| | ||||||| |||| |||| Sbjct 863095 GTTTCCAGCTCTTTGGATTCCAGATTTATTTATGAAGCGTGTGGAGAGCAACGACAAGTG 863036 Query 53725 G 53725 | Sbjct 863035 G 863035 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| || | ||| |||| || ||||||||| | |||||| | | || | ||| || Sbjct 862043 TCAAGAAGTTGTACAGGACAGTTTGGGAGATTTCTCAGAAGTCTGTCATCGTTATGGCTG 861984 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 ||||| | || || |||||| |||||| || ||| |||||||| || || || Sbjct 861983 CTGATAGGGGCGCATACATCTGCCAGTCTCAATCTATGAACATCCATTTGCAGTCACCAA 861924 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| || |||| || ||||||||||| || ||||||||||| | ||||| |||| Sbjct 861923 CTATGGGTAAATTGACTTCCATGCACTTTTATGGCTGGAAGAAGGGCTTGAAGACAGGTA 861864 Query 55908 TGTACTA 55914 ||||||| Sbjct 861863 TGTACTA 861857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215794794000