Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq12 156 5e-33
seq1 129 7e-25
seq25 123 3e-23
>seq12
Length=1432871
Score = 156 bits (172), Expect = 5e-33
Identities = 520/801 (65%), Gaps = 21/801 (3%)
Strand=Plus/Plus
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
||||||| | || |||||| || ||||| || || ||||||| ||| ||||| ||
Sbjct 862776 ACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATTAC 862835
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
||| || ||||| ||||||||| |||| | || ||||| || || ||| | ||
Sbjct 862836 TCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCT 862895
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCG 81123
| || || ||| | || | ||||| || | ||| | | | |||||
Sbjct 862896 CCAAAATCTGGTACCATAACTTCTGAGCCTTCACTGTTCTTCTTCC---ACGT-CCTTCT 862951
Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGG 81183
| | || | ||| || ||||||| | |||||| || || | ||| ||||
Sbjct 862952 TTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGGT 863011
Query 81184 CACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG 81243
||| ||| | | || ||| | | || | |||| ||| |||||| ||
Sbjct 863012 GCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATAAATAAA 863071
Query 81244 TCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTT 81302
|| || ||||| || || | |||| || || ||| || |||||| | ||| || ||
Sbjct 863072 TCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCA-CGAATCTCCTCTTTACCATGATT 863130
Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362
| | |||| |||||| | ||| || |||||||| ||||||| || | || ||
Sbjct 863131 CTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAAT 863190
Query 81363 CGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416
| || |||| || |||| || | || || | ||||| ||| || ||
Sbjct 863191 GGCACCTGGTCTCTTGTTAC---CACCTTGATCCACATATCTAGCAGTACTGTTGAACAC 863247
Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476
||| | ||| || || ||||| | || ||| || ||||| | ||| ||| || |
Sbjct 863248 ACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGT 863307
Query 81477 GGCGCGCACCTTGCTGATTGA-AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535
|| || | ||| ||| || |||||| || ||||| | ||| |||||| |||||
Sbjct 863308 GGAACGAATGTTG-TGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCAC 863366
Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595
|| | |||| || || || || || || || || | |||||| ||| ||||| |
Sbjct 863367 ACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGC 863426
Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655
| |||||||||||||| | | || |||||||||| ||||| | || || |||
Sbjct 863427 ATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGA 863486
Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAA 81715
| || | |||||||||| |||||| | |||| || |||||||| ||||| ||||
Sbjct 863487 AGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAA 863546
Query 81716 TACCGATAGCTACACGCATAA 81736
|||||| || || | |||||
Sbjct 863547 TACCGACGGCCACTCTCATAA 863567
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27388 GCCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT 27447
||| || || ||| | ||||||||| || || ||||| | ||||| |||||||| ||
Sbjct 1192967 GCCCGATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACC 1192908
Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507
| ||||| ||||| || | ||||| ||| | ||| || || || |||||||||
Sbjct 1192907 TTGGAGGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAG 1192848
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
||||| || ||||| |||||| | | || |||||||||||||| | ||||||| |
Sbjct 1192847 GGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGA 1192788
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | | ||||| || |||| ||||| || |||||||| | ||||||
Sbjct 1192787 ACTTTGTCGGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTG 1192737
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106
|||||||| || ||||| | ||||||||||||||| || | |||||| ||| | | ||
Sbjct 861857 TAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 861916
Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166
| | || || || || |||||||| ||| |||||||| |||||| | || ||
Sbjct 861917 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 861976
Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACACC 80226
| ||| || ||||| | || | ||||| || | ||| ||||| ||||| | |||| |
Sbjct 861977 CTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 862036
Query 80227 TT 80228
||
Sbjct 862037 TT 862038
>seq1
Length=1856900
Score = 129 bits (142), Expect = 7e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| | || || |||||||| || | ||||| |||||
Sbjct 768034 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 768093
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||||| ||| | ||| || || ||||| |||||||||||||| || || ||
Sbjct 768094 CGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGATCA 768153
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| | | || |||||||||||||| | ||||||| | | || | | ||||| ||
Sbjct 768154 ACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAA 768213
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| || |||||||| |||||||| | ||||||
Sbjct 768214 CATTCAGAAGGAATCTACTCTTCACTTGGTCTTG 768247
>seq25
Length=1112461
Score = 123 bits (136), Expect = 3e-23
Identities = 154/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || ||| | || || ||||| || || || |||||||| ||
Sbjct 696142 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696083
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | ||| | ||| || ||||| || ||||| |||||||| ||||||||
Sbjct 696082 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696023
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || ||||| ||||||||| | || || | | || || | || || ||
Sbjct 696022 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695963
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
| | ||||| || || ||||||||| | |||
Sbjct 695962 TATTCAAAAAGAGTCTACTCTTCATTTGGTC 695932
Score = 123 bits (136), Expect = 3e-23
Identities = 154/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || ||| | || || ||||| || || || |||||||| ||
Sbjct 696370 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696311
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | ||| | ||| || ||||| || ||||| |||||||| ||||||||
Sbjct 696310 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696251
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || ||||| ||||||||| | || || | | || || | || || ||
Sbjct 696250 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696191
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
| | ||||| || || ||||||||| | |||
Sbjct 696190 TATTCAAAAAGAGTCTACTCTTCATTTGGTC 696160
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || ||| | || || ||||| || || || |||||||| ||
Sbjct 695914 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 695855
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | ||| | ||| || ||||| || ||||| |||||||| ||||||||
Sbjct 695854 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 695795
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || ||||| ||||||||| | || || | | || || | || || ||
Sbjct 695794 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695735
Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608
| | ||||| || || ||||||||
Sbjct 695734 TATTCAAAAAGAGTCAACTCTTCA 695711
Score = 118 bits (130), Expect = 1e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 27393 AAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452
|||||| | || |||||||| ||||| ||||| | || || ||||| || || | ||
Sbjct 696610 AAATATCAACATCATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGA 696551
Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512
|||||| || ||| | || | ||| | ||| || ||||| || ||||| |||||
Sbjct 696550 GGTTGAATCTTCTGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAAT 696491
Query 27513 TCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572
||| |||||||||||| | | || ||||| ||||||||| | || || | | || ||
Sbjct 696490 TCCACCAGACCAGCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACT 696431
Query 27573 AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
| || || ||| | ||||| || || ||||||||| | |||
Sbjct 696430 TTCTGATTACAATATTCAAAAAGAGTCTACTCTTCATTTGGTC 696388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310186133600
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