Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12 156 5e-33 seq1 129 7e-25 seq25 123 3e-23 >seq12 Length=1432871 Score = 156 bits (172), Expect = 5e-33 Identities = 520/801 (65%), Gaps = 21/801 (3%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 ||||||| | || |||||| || ||||| || || ||||||| ||| ||||| || Sbjct 862776 ACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATTAC 862835 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| || ||||| ||||||||| |||| | || ||||| || || ||| | || Sbjct 862836 TCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCT 862895 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCG 81123 | || || ||| | || | ||||| || | ||| | | | ||||| Sbjct 862896 CCAAAATCTGGTACCATAACTTCTGAGCCTTCACTGTTCTTCTTCC---ACGT-CCTTCT 862951 Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGG 81183 | | || | ||| || ||||||| | |||||| || || | ||| |||| Sbjct 862952 TTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGGT 863011 Query 81184 CACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG 81243 ||| ||| | | || ||| | | || | |||| ||| |||||| || Sbjct 863012 GCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATAAATAAA 863071 Query 81244 TCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTT 81302 || || ||||| || || | |||| || || ||| || |||||| | ||| || || Sbjct 863072 TCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCA-CGAATCTCCTCTTTACCATGATT 863130 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 | | |||| |||||| | ||| || |||||||| ||||||| || | || || Sbjct 863131 CTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAAT 863190 Query 81363 CGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416 | || |||| || |||| || | || || | ||||| ||| || || Sbjct 863191 GGCACCTGGTCTCTTGTTAC---CACCTTGATCCACATATCTAGCAGTACTGTTGAACAC 863247 Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476 ||| | ||| || || ||||| | || ||| || ||||| | ||| ||| || | Sbjct 863248 ACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGT 863307 Query 81477 GGCGCGCACCTTGCTGATTGA-AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 || || | ||| ||| || |||||| || ||||| | ||| |||||| ||||| Sbjct 863308 GGAACGAATGTTG-TGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCAC 863366 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| || || || || || || || || | |||||| ||| ||||| | Sbjct 863367 ACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGC 863426 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 | |||||||||||||| | | || |||||||||| ||||| | || || ||| Sbjct 863427 ATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGA 863486 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAA 81715 | || | |||||||||| |||||| | |||| || |||||||| ||||| |||| Sbjct 863487 AGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAA 863546 Query 81716 TACCGATAGCTACACGCATAA 81736 |||||| || || | ||||| Sbjct 863547 TACCGACGGCCACTCTCATAA 863567 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27388 GCCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT 27447 ||| || || ||| | ||||||||| || || ||||| | ||||| |||||||| || Sbjct 1192967 GCCCGATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACC 1192908 Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 | ||||| ||||| || | ||||| ||| | ||| || || || ||||||||| Sbjct 1192907 TTGGAGGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAG 1192848 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || ||||| |||||| | | || |||||||||||||| | ||||||| | Sbjct 1192847 GGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGA 1192788 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | | ||||| || |||| ||||| || |||||||| | |||||| Sbjct 1192787 ACTTTGTCGGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTG 1192737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||| || ||||| | ||||||||||||||| || | |||||| ||| | | || Sbjct 861857 TAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 861916 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | || || || || |||||||| ||| |||||||| |||||| | || || Sbjct 861917 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 861976 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACACC 80226 | ||| || ||||| | || | ||||| || | ||| ||||| ||||| | |||| | Sbjct 861977 CTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 862036 Query 80227 TT 80228 || Sbjct 862037 TT 862038 >seq1 Length=1856900 Score = 129 bits (142), Expect = 7e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | || || |||||||| || | ||||| ||||| Sbjct 768034 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 768093 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| ||| | ||| || || ||||| |||||||||||||| || || || Sbjct 768094 CGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGATCA 768153 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || |||||||||||||| | ||||||| | | || | | ||||| || Sbjct 768154 ACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAA 768213 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || |||||||| |||||||| | |||||| Sbjct 768214 CATTCAGAAGGAATCTACTCTTCACTTGGTCTTG 768247 >seq25 Length=1112461 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || ||| | || || ||||| || || || |||||||| || Sbjct 696142 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696083 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||| || ||||| || ||||| |||||||| |||||||| Sbjct 696082 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696023 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| ||||||||| | || || | | || || | || || || Sbjct 696022 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695963 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | | ||||| || || ||||||||| | ||| Sbjct 695962 TATTCAAAAAGAGTCTACTCTTCATTTGGTC 695932 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || ||| | || || ||||| || || || |||||||| || Sbjct 696370 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696311 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||| || ||||| || ||||| |||||||| |||||||| Sbjct 696310 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696251 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| ||||||||| | || || | | || || | || || || Sbjct 696250 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696191 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | | ||||| || || ||||||||| | ||| Sbjct 696190 TATTCAAAAAGAGTCTACTCTTCATTTGGTC 696160 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || ||| | || || ||||| || || || |||||||| || Sbjct 695914 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 695855 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||| || ||||| || ||||| |||||||| |||||||| Sbjct 695854 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 695795 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| ||||||||| | || || | | || || | || || || Sbjct 695794 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695735 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | | ||||| || || |||||||| Sbjct 695734 TATTCAAAAAGAGTCAACTCTTCA 695711 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 27393 AAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452 |||||| | || |||||||| ||||| ||||| | || || ||||| || || | || Sbjct 696610 AAATATCAACATCATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGA 696551 Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 |||||| || ||| | || | ||| | ||| || ||||| || ||||| ||||| Sbjct 696550 GGTTGAATCTTCTGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAAT 696491 Query 27513 TCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||| |||||||||||| | | || ||||| ||||||||| | || || | | || || Sbjct 696490 TCCACCAGACCAGCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACT 696431 Query 27573 AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | || || ||| | ||||| || || ||||||||| | ||| Sbjct 696430 TTCTGATTACAATATTCAAAAAGAGTCTACTCTTCATTTGGTC 696388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310186133600