Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 127 1e-24 seq12 109 3e-19 >seq25 Length=1112461 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| ||||| ||| |||||||| || ||||| |||||||||| ||||||| Sbjct 696389 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696448 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| |||||||||||||| || | ||| ||||| || || | ||| ||||| ||| Sbjct 696449 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696508 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||||| ||||| || || ||||| || || || | || || || || Sbjct 696509 ATCTTTTG-CTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTT 696567 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || ||||||||||| |||||| || Sbjct 696568 TCCAGTTAATGTCTTCACAAAAATTTGCATGATG 696601 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| ||||| ||| |||||||| || ||||| |||||||||| ||||||| Sbjct 695933 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 695992 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| |||||||||||||| || | ||| ||||| || || | ||| ||||| ||| Sbjct 695993 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696052 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||||| ||||| || || ||||| || || || | || || || || Sbjct 696053 ATCTTTTG-CTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTT 696111 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| ||||| || ||||| Sbjct 696112 TCCCGTCAACGTTTTAACAAAGATTTGCAT 696141 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| ||||| ||| |||||||| || ||||| |||||||||| ||||||| Sbjct 696161 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696220 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| |||||||||||||| || | ||| ||||| || || | ||| ||||| ||| Sbjct 696221 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696280 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||||| ||||| || || ||||| || || || | || || || || Sbjct 696281 ATCTTTTG-CTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTT 696339 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| ||||| || ||||| Sbjct 696340 TCCCGTCAACGTTTTAACAAAGATTTGCAT 696369 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| ||| |||||||| || ||||| |||||||||| ||||||| Sbjct 695705 ACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 695764 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| |||||||||||||| || | ||| ||||| || || | ||| ||||| ||| Sbjct 695765 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 695824 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||||| ||||| || || ||||| || || || | || || || || Sbjct 695825 ATCTTTTG-CTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTT 695883 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| ||||| || ||||| Sbjct 695884 TCCCGTCAACGTTTTAACAAAGATTTGCAT 695913 >seq12 Length=1432871 Score = 109 bits (120), Expect = 3e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||| || ||||| || || || Sbjct 1192723 CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAC 1192782 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | || || | || ||||| ||||| || || | ||| || || || || Sbjct 1192783 AAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGG 1192842 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||||| ||||||||| || | ||| ||||| |||||| Sbjct 1192843 ATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACC 1192902 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 |||| ||| || || |||||||| || || || || ||||| ||||| ||||| Sbjct 1192903 TCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTTGAT 1192955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729484926990