Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq25 136 3e-27 seq1 104 2e-17 >seq25 Length=1112461 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| || ||| | || || || || || ||| | || Sbjct 696141 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 696082 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| |||||||| || ||||| || ||||| || || Sbjct 696081 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696022 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| ||||| || |||||||||||| | || |||| |||||||| Sbjct 696021 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 695962 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | |||||||| | | ||| |||| || || Sbjct 695961 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGGAAT 695912 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| || ||| | || || || || || ||| | || Sbjct 696369 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 696310 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| |||||||| || ||||| || ||||| || || Sbjct 696309 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696250 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| ||||| || |||||||||||| | || |||| |||||||| Sbjct 696249 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 696190 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | |||||||| | | ||| |||| || || Sbjct 696189 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGGAAT 696140 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| || ||| | || || || || || ||| | || Sbjct 695913 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 695854 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| |||||||| || ||||| || ||||| || || Sbjct 695853 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 695794 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| ||||| || |||||||||||| | || |||| |||||||| Sbjct 695793 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 695734 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||| ||||| || | || |||||| Sbjct 695733 ATTCAAAAAGAGTCAACTCTTCACTTGGTT 695704 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || | || || ||| | || || | || || ||| | || Sbjct 696598 CATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTC 696539 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||||| |||||||| || ||||| || ||||| || || Sbjct 696538 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696479 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || |||| ||||| || |||||||||||| | || |||| |||||||| Sbjct 696478 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696419 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | |||||||| | | ||| |||| || || Sbjct 696418 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGGAAT 696368 >seq1 Length=1856900 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| |||| || | || ||||| | ||| Sbjct 768035 ATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTCC 768094 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||| || || || || || || || ||||| |||||| Sbjct 768095 GATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGATCAA 768154 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||| || || || | || || |||||| Sbjct 768155 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAAC 768214 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || ||||| ||| | ||| | || || || Sbjct 768215 ATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGGTAT 768264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918236905600