Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq25 165 2e-35
seq12 138 3e-27
seq1 134 3e-26
>seq25
Length=1112461
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959
|| || || | ||||||||| ||||||||||| || || ||||| | ||| || |||||
Sbjct 695699 CTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695758
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
||||||| ||||| || || || || | | || ||||| || |||| |||||||||
Sbjct 695759 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 695818
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|| || |||||||| || || || ||||| |||||||| ||||||||| || |||||
Sbjct 695819 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 695878
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||||||||| | || || ||||| | ||||||
Sbjct 695879 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959
|| ||||| | |||||||| ||||||||||| || || ||||| | ||| || |||||
Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
||||||| ||||| || || || || | | || ||||| || |||| |||||||||
Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|| || |||||||| || || || ||||| |||||||| ||||||||| || |||||
Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||||||||| | || || ||||| | ||||||
Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959
|| ||||| | |||||||| ||||||||||| || || ||||| | ||| || |||||
Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
||||||| ||||| || || || || | | || ||||| || |||| |||||||||
Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|| || |||||||| || || || ||||| |||||||| ||||||||| || |||||
Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||||||||| | || || ||||| | ||||||
Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370
Score = 158 bits (174), Expect = 3e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959
|| ||||| | |||||||| ||||||||||| || || ||||| | ||| || |||||
Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
||||||| ||||| || || || || | | || ||||| || |||| |||||||||
Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|| || |||||||| || || || ||||| |||||||| ||||||||| | |||||
Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| || | ||||| ||||| | |||||
Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597
>seq12
Length=1432871
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| | ||| | ||||||||| ||||| || |||||||| || |||| | || || ||
Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||| |||| |||||| || || ||||| | | || || || || || | ||| |||||
Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1192853
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| ||||||||||| || || || || |||||||| || || ||||| | |||||
Sbjct 1192854 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1192913
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || | |||||| || || | ||||||||
Sbjct 1192914 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952
Score = 93.3 bits (102), Expect = 1e-13
Identities = 129/178 (72%), Gaps = 6/178 (3%)
Strand=Plus/Minus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
||||||||||||||||||||||| || || |||||| | ||||||| ||| | ||| |
Sbjct 1405410 CTTCCAAAGAAGCACGGAAGAGGTGGTCAGTCTGCTGTTCGTTTTGCCAGATTAAGAATG 1405351
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTT---TTATC 139923
|| ||||| ||||| || | ||||| ||||| ||| || | ||| || ||| |
Sbjct 1405350 GAGAAGAGACACAATTATATTAGAAAGGTTGCTGAGGTTGCCGTCCAGAATTTCATTACC 1405291
Query 139924 AAAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
|| || | |||| || | ||| | ||||||||||||| || || |||||||
Sbjct 1405290 AACGATA--AAGT-CAACGTCGCAGGTTTAATTTTGGCAGGTTCAGCTGATTTCAAGA 1405236
>seq1
Length=1856900
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| | ||| | ||||||||| || || || || ||||| || || | | || || ||
Sbjct 768250 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 768191
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||| |||| |||||| || || ||||| | | ||||| ||||| |||| ||| |||||
Sbjct 768190 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 768131
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|||||||||||||| || || || || ||||| || || || ||||| | |||||
Sbjct 768130 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 768071
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| ||||| | ||||| || || | ||||||||
Sbjct 768070 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151554450950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |