Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq25 165 2e-35 seq12 138 3e-27 seq1 134 3e-26 >seq25 Length=1112461 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||||||||| ||||||||||| || || ||||| | ||| || ||||| Sbjct 695699 CTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695758 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| ||||| || || || || | | || ||||| || |||| ||||||||| Sbjct 695759 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 695818 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || |||||||| || || || ||||| |||||||| ||||||||| || ||||| Sbjct 695819 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 695878 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| | || || ||||| | |||||| Sbjct 695879 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||||| | |||||||| ||||||||||| || || ||||| | ||| || ||||| Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| ||||| || || || || | | || ||||| || |||| ||||||||| Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || |||||||| || || || ||||| |||||||| ||||||||| || ||||| Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| | || || ||||| | |||||| Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||||| | |||||||| ||||||||||| || || ||||| | ||| || ||||| Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| ||||| || || || || | | || ||||| || |||| ||||||||| Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || |||||||| || || || ||||| |||||||| ||||||||| || ||||| Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| | || || ||||| | |||||| Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||||| | |||||||| ||||||||||| || || ||||| | ||| || ||||| Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| ||||| || || || || | | || ||||| || |||| ||||||||| Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || |||||||| || || || ||||| |||||||| ||||||||| | ||||| Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || | ||||| ||||| | ||||| Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597 >seq12 Length=1432871 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| ||||| || |||||||| || |||| | || || || Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||| || || ||||| | | || || || || || | ||| ||||| Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1192853 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||||| || || || || |||||||| || || ||||| | ||||| Sbjct 1192854 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1192913 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | |||||||| Sbjct 1192914 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||||||||||||||||||||| || || |||||| | ||||||| ||| | ||| | Sbjct 1405410 CTTCCAAAGAAGCACGGAAGAGGTGGTCAGTCTGCTGTTCGTTTTGCCAGATTAAGAATG 1405351 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTT---TTATC 139923 || ||||| ||||| || | ||||| ||||| ||| || | ||| || ||| | Sbjct 1405350 GAGAAGAGACACAATTATATTAGAAAGGTTGCTGAGGTTGCCGTCCAGAATTTCATTACC 1405291 Query 139924 AAAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 || || | |||| || | ||| | ||||||||||||| || || ||||||| Sbjct 1405290 AACGATA--AAGT-CAACGTCGCAGGTTTAATTTTGGCAGGTTCAGCTGATTTCAAGA 1405236 >seq1 Length=1856900 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| || || || || ||||| || || | | || || || Sbjct 768250 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 768191 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||| || || ||||| | | ||||| ||||| |||| ||| ||||| Sbjct 768190 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 768131 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||||| || || || || ||||| || || || ||||| | ||||| Sbjct 768130 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 768071 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| | ||||| || || | |||||||| Sbjct 768070 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151554450950