Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq12 170 5e-37
seq1 165 2e-35
seq25 150 4e-31
>seq12
Length=1432871
Score = 170 bits (188), Expect = 5e-37
Identities = 169/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| ||||| || || || |||| ||||| || | ||||||||| ||
Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||| || | |||||| ||||| ||||| | || || || || || || || || |||||
Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1192853
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||||||||| ||| || |||||||| || | ||||| || || |||||
Sbjct 1192854 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1192913
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || |||||||| || | ||| | |||||||||
Sbjct 1192914 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952
>seq1
Length=1856900
Score = 165 bits (182), Expect = 2e-35
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| ||||| ||||| || || | ||||| || | ||||||||| ||
Sbjct 768250 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 768191
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||| || | |||||| ||||| ||||| | || ||||| || || ||||| || |||||
Sbjct 768190 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 768131
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|| |||||||||||||| ||| || ||||| || || | ||||| || || |||||
Sbjct 768130 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 768071
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||||||| || || | ||| | |||||||||
Sbjct 768070 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032
>seq25
Length=1112461
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|| || || | ||| ||||| || |||||||| | ||||||||| | | ||||| ||
Sbjct 695699 CTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695758
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
||||| | ||||| || || || || | | || ||||| || ||||| ||||||||
Sbjct 695759 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 695818
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
||||| ||||||||||| ||| ||||| ||||| || | ||| || |||| ||||||
Sbjct 695819 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 695878
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| |||||||| ||||| | || | |||||||
Sbjct 695879 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|| ||||| | || ||||| || |||||||| | ||||||||| | | ||||| ||
Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
||||| | ||||| || || || || | | || ||||| || ||||| ||||||||
Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
||||| ||||||||||| ||| ||||| ||||| || | ||| || |||| ||||||
Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| |||||||| ||||| | || | |||||||
Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|| ||||| | || ||||| || |||||||| | ||||||||| | | ||||| ||
Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
||||| | ||||| || || || || | | || ||||| || ||||| ||||||||
Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
||||| ||||||||||| ||| ||||| ||||| || | ||| || |||| ||||||
Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| |||||||| ||||| | || | |||||||
Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|| ||||| | || ||||| || |||||||| | ||||||||| | | ||||| ||
Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
||||| | ||||| || || || || | | || ||||| || ||||| ||||||||
Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
||||| ||||||||||| ||| ||||| ||||| || | ||| || |||||||||||
Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || || | || | ||||||
Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530741620820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |