Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq23 179 3e-40 >seq23 Length=1356690 Score = 179 bits (198), Expect = 3e-40 Identities = 581/894 (65%), Gaps = 25/894 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||||| |||| ||| || ||||||||||| || || | || || |||||| Sbjct 991523 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 991464 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || || || ||||| || |||||||| || || || | || | |||| Sbjct 991463 TCCATGAAGTCGAATGGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGC 991404 Query 4377 AATCGGTCAGCTACA-AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || | ||| || ||| || || | ||||| ||| | ||| |||| || || | ||| Sbjct 991403 AACCTGTCGGC-ACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAA 991345 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || || || |||| | || | || || || ||| | || || || || || || Sbjct 991344 AGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGAT 991285 Query 4496 ATCTTTT-ATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 ||| || || | | ||| |||| || |||| ||||| | || |||| Sbjct 991284 -TCTCTTGATAATGACCTTACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAA 991226 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 |||| ||| | ||| || ||||||| || || |||||||| ||||| | || |||| Sbjct 991225 AATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCA 991166 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | ||||||||||| || | ||| || || | |||||| || ||||| || || | |||| Sbjct 991165 TCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTT 991106 Query 4675 CTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 | | ||| ||||| || || || || | | | || | | | ||| || ||| Sbjct 991105 CAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATC-ATCATTG---TTTATC 991050 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 ||| | || ||||| ||| || | ||||| |||||||| | || || || || Sbjct 991049 CATCTCAAAGCCCATAAAGCCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAAC 990990 Query 4791 AATT-----TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || | ||| ||| ||| ||||| || || || | ||| ||| Sbjct 990989 AAGTAGTCGGACTCTTT-----CTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAG 990935 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | ||||| || || || || | |||||| || || || ||| ||| || || | || Sbjct 990934 TCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTA 990875 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 || || | || ||| | | | | || || || | || ||||| || || | Sbjct 990874 ACTGCACCTGCTTCATAAAGTTCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGG 990815 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTA---CTGTTCGTCAGGCTTAAGTTTTTTCC 5022 |||| || ||||| ||| |||| || ||||| || | | || | | | |||| Sbjct 990814 CAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCC 990755 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||| || |||||| || | | ||| | || || ||||||| || || || || || | Sbjct 990754 AGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCT 990695 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGT 5136 | |||||||| ||| |||||| |||||||| || | || || ||||||| Sbjct 990694 TCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCTGT 990641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049443859990