Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq23 221 2e-52 seq12 205 1e-47 >seq23 Length=1356690 Score = 221 bits (244), Expect = 2e-52 Identities = 576/867 (66%), Gaps = 20/867 (2%) Strand=Plus/Minus Query 46360 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTA 46419 ||||| || |||||||| || || |||| || ||||||||||| || || || ||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 46420 GTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 46479 || || || |||| || | |||| ||| | || || || || ||| ||| || Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 991383 Query 46480 ATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA 46539 | ||| |||||| || | ||||| || | | || || ||||| || | Sbjct 991382 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 991323 Query 46540 -AGAAACTCTTGTTCAATAGTGACAGCATCCG--AT-ATTATCGATGTTACTGTTTCCTC 46595 ||||| | || | ||||| | ||||| || | || ||| || || || || ||| Sbjct 991322 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCT-TGATAATGA--CCTT 991267 Query 46596 ACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTC 46655 ||||||||||||| |||| || |||| | ||||||||||| ||| || || || Sbjct 991266 ACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTC 991207 Query 46656 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAG 46715 |||||| | || | |||||||| || || || || ||||| | || | ||| || | Sbjct 991206 ATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAA 991147 Query 46716 CCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775 ||| || || | || || |||||||| || || | ||||| | || || || || || Sbjct 991146 CCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAAC 991087 Query 46776 AAGTCTCTCTCCGT---AACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTT 46832 | |||||| | | || ||||||| | ||||| || |||||| |||||| Sbjct 991086 CAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTT 991027 Query 46833 TTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATC 46892 | ||| | | || ||||| | || ||||| || | ||| || | | || Sbjct 991026 CTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTC 990967 Query 46893 TTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCAT 46952 | | ||| || || || ||||| ||| | || || || ||||| |||| || Sbjct 990966 AGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAAT 990907 Query 46953 CTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT-CTGTACAAAATCGTTC-- 47009 ||| || || || || |||||| |||| | ||| |||| || | ||| |||| Sbjct 990906 CTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAA---GTTCTG 990850 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 | ||||||||||| || || ||||| ||| ||||| || ||||| ||| | || Sbjct 990849 TGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGAT 990790 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTT---ATTCCAGTCATTGATATCTTTTGATATATC 47126 || ||| | |||| || | ||| || ||||||||| | | ||| ||||| | ||| Sbjct 990789 GAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATC 990730 Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 | || || || |||||||| || ||||| || || || ||||| | |||||||||| Sbjct 990729 GATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATC 990670 Query 47187 ATATTGGATCGGAAAAATAACAAATCT 47213 || || || || || || || ||||| Sbjct 990669 GTACTGAATAGGGAACATCACGAATCT 990643 >seq12 Length=1432871 Score = 205 bits (226), Expect = 1e-47 Identities = 581/883 (66%), Gaps = 10/883 (1%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || |||||||| | ||| || ||||| ||||| ||| | ||| || | | | Sbjct 863054 ACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATC 863113 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || ||||||| | | ||| | || || | ||||||| |||||| || Sbjct 863114 TCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGC 863173 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 || | || || || || |||| |||| || ||||| || ||||| | |||||| ||| Sbjct 863174 TCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCA 863233 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 || | || | || | | ||| ||||| || ||||| ||||||||||| || || | | Sbjct 863234 GTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCA 863293 Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897 ||||| ||| | |||||| || ||| || || || || || || | ||| Sbjct 863294 ATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTA 863353 Query 76898 GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATG 76957 || || | |||||| ||||||| || || ||||| || || ||| ||||| |||| Sbjct 863354 GAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATT 863413 Query 76958 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGA 77017 || | || || ||||| ||| | | ||| || ||||| ||||| || || Sbjct 863414 GCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGT 863473 Query 77018 GATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTT--CTA 77075 |||||||| ||||| || | | || | | | |||| ||| ||| ||| | Sbjct 863474 GATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTC--CAACACCTTAGGAA 863531 Query 77076 TATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG 77135 |||| |||||| || || || || | ||| | | || || |||| ||| || Sbjct 863532 TATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAA 863591 Query 77136 TCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 77195 |||| ||| ||| |||||| || || ||||||||| || |||||||| ||||||| Sbjct 863592 CCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGT 863651 Query 77196 ATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAA 77255 | ||||| | |||||| |||| | || || | | ||||||| | |||||| Sbjct 863652 AACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAACAA 863711 Query 77256 TATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTC-CATTTTTAGGATTAACATA 77313 | | || | | | |||||| || ||||| | | ||| | || ||||| || Sbjct 863712 TCT-TATAAACCTCATCAGAAATCATAGGAGA-CTTCTTCTGGGTCTTTGGATTGTAGTA 863769 Query 77314 GTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGA 77373 ||| ||| || || || || || || | || || || | |||||| | ||| || Sbjct 863770 GTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGA 863829 Query 77374 TACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGT-GGCTG 77432 | || | |||||| || | | | |||||||| ||||| ||| || || || |||| Sbjct 863830 GATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTG 863888 Query 77433 CTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCC 77475 | |||| || | ||| | || || || || || ||||| || Sbjct 863889 CAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACC 863931 Score = 161 bits (178), Expect = 1e-34 Identities = 517/790 (65%), Gaps = 13/790 (2%) Strand=Plus/Plus Query 75406 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 75465 |||||||| ||||||||||| || || | ||| |||| || || || |||||| Sbjct 861847 TGTACGTAAGTAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGA 861906 Query 75466 TGTTAGTTTGGA-ATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 75524 || | ||| ||| | | | || | ||| || ||||| || ||| || || Sbjct 861907 AGTCAATTTACCCATAGTTGGTGACTGCAA-ATGGATGTTCATAGATTGAGACTGGCAGA 861965 Query 75525 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 75584 || | || || |||||||| ||||| || | | ||| |||| ||| ||||||| | Sbjct 861966 TGTATGCGCCCCTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTG 862025 Query 75585 TTTTGAA-AACTTGTTTGATATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCA 75640 | || | ||||| || ||| | ||| |||| |||| || ||||| || ||| Sbjct 862026 TCCTGTACAACTTCTT-GATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTG 862084 Query 75641 TCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTA 75700 || || || ||||| || |||| ||||| | | | || | | | |||| Sbjct 862085 TCGTGAATGATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTC 862144 Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 | | | ||||||||| || || ||||| |||| | ||||||| || || ||| Sbjct 862145 AACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTA 862204 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 ||| ||||||| | | |||| || | |||| ||| || | ||| |||||||||||| Sbjct 862205 GAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGC 862264 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT-CTGATTTTATCTTTTAGATA 75879 |||||||||||||| | | ||||| |||||| || || || ||| | || ||| Sbjct 862265 ATAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-GTCTTGGCAATCTTAGCCTTCAGAGT 862323 Query 75880 TTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTT 75939 | ||| ||||| ||||| | || | ||| | ||| ||||||||||| || || Sbjct 862324 ATCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATATTGTAGAATACCCTT 862383 Query 75940 GCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACT 75999 ||| || || | |||||| | ||||| || || | |||| || | | Sbjct 862384 TGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGA 862443 Query 76000 CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTC 76059 |||| || ||| ||| ||| | || || || |||| | ||||| || | || || Sbjct 862444 TTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATC 862503 Query 76060 AAGACTATCAAAAGGATAATGTAA--AAGAATAAATGCATCTGCTAGTCCCTGAACTCCA 76117 ||| |||||||| || | ||| | ||| || | ||| || || ||||| | ||| Sbjct 862504 TGGACAGTCAAAAGG-TAGTCTAAGCATGAA-GAAGGTATCAGCAAGACCCTGGATACCA 862561 Query 76118 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTA 76177 | | |||||||||| | |||| | ||||| | || || |||| || || ||||| Sbjct 862562 AGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTT 862621 Query 76178 ATATCTATAA 76187 | || |||| Sbjct 862622 CTGTCAATAA 862631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934132649600