Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12 134 3e-26 seq25 129 1e-24 seq1 107 4e-18 >seq12 Length=1432871 Score = 134 bits (148), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| || ||||||||||| || | |||||||| ||||| || | Sbjct 1192743 CAAG-TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATCCTCCA 1192801 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | |||||||| || | | |||||| ||||| ||||| | Sbjct 1192802 ACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGA 1192861 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| | || | | |||| ||| ||| || || | || ||||| || | Sbjct 1192862 TCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTAC 1192921 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||| | |||||||| Sbjct 1192922 CGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952 >seq25 Length=1112461 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || ||||| | ||||||||||||||||||||| || |||||||| | | ||||| || Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | || ||||| || || | |||||||||||| | | ||||||||||| Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| ||||| || ||| | || | |||| ||| || || || || || || Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| | || || || |||| |||||| Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || ||||| | ||||||||||||||||||||| || |||||||| | | ||||| || Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | || ||||| || || | |||||||||||| | | ||||||||||| Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| ||||| || ||| | || | |||| ||| || || || || || || Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| | || || || |||| |||||| Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || ||||| | ||||||||||||||||||||| || |||||||| | | ||||| || Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | || ||||| || || | |||||||||||| | | ||||||||||| Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| ||||| || ||| | || | |||| ||| || || || | || || Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | |||||||| || | ||||| Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597 Score = 116 bits (128), Expect = 9e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||||||||| || |||||||| | | ||||| || ||||| | Sbjct 695707 CAAG-TGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCA 695765 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| || || | |||||||||||| | | ||||||||||| ||||||| Sbjct 695766 ATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAA 695825 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| || ||| | || | |||| ||| || || || || || || || || | Sbjct 695826 TCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTC 695885 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| | || || || |||| |||||| Sbjct 695886 CCGTCAACGTTTTAACAAAGATTTGCATT 695914 >seq1 Length=1856900 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || || || |||||||| || | |||||||| ||||| || | Sbjct 768241 CAAG-TGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCA 768183 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | ||||| || || | | ||||| ||||| || || | Sbjct 768182 ACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGA 768123 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| | || | | | || ||| ||| || || | || ||||| || | Sbjct 768122 TCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGTCTTAC 768063 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| | ||||| ||||| | |||||||| Sbjct 768062 CCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820356500130