Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq12 134 3e-26
seq25 129 1e-24
seq1 107 4e-18
>seq12
Length=1432871
Score = 134 bits (148), Expect = 3e-26
Identities = 157/211 (74%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||||||||| || ||||||||||| || | |||||||| ||||| || |
Sbjct 1192743 CAAG-TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATCCTCCA 1192801
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|| || || ||||| | |||||||| || | | |||||| ||||| ||||| |
Sbjct 1192802 ACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGA 1192861
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||||| |||||| | || | | |||| ||| ||| || || | || ||||| || |
Sbjct 1192862 TCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTAC 1192921
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| || | |||||| ||||| | ||||||||
Sbjct 1192922 CGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952
>seq25
Length=1112461
Score = 129 bits (142), Expect = 1e-24
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949
|| ||||| | ||||||||||||||||||||| || |||||||| | | ||||| ||
Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986
Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||||| | || ||||| || || | |||||||||||| | | |||||||||||
Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|||||||| ||||| || ||| | || | |||| ||| || || || || || ||
Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || ||||| | || || || |||| ||||||
Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142
Score = 129 bits (142), Expect = 1e-24
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949
|| ||||| | ||||||||||||||||||||| || |||||||| | | ||||| ||
Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214
Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||||| | || ||||| || || | |||||||||||| | | |||||||||||
Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|||||||| ||||| || ||| | || | |||| ||| || || || || || ||
Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || ||||| | || || || |||| ||||||
Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949
|| ||||| | ||||||||||||||||||||| || |||||||| | | ||||| ||
Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442
Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||||| | || ||||| || || | |||||||||||| | | |||||||||||
Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|||||||| ||||| || ||| | || | |||| ||| || || || | || ||
Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || | |||||||| || | |||||
Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597
Score = 116 bits (128), Expect = 9e-21
Identities = 152/209 (73%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||| ||||||||||| || |||||||| | | ||||| || ||||| |
Sbjct 695707 CAAG-TGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCA 695765
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|| ||||| || || | |||||||||||| | | ||||||||||| |||||||
Sbjct 695766 ATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAA 695825
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||||| || ||| | || | |||| ||| || || || || || || || || |
Sbjct 695826 TCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTC 695885
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|||| | || || || |||| ||||||
Sbjct 695886 CCGTCAACGTTTTAACAAAGATTTGCATT 695914
>seq1
Length=1856900
Score = 107 bits (118), Expect = 4e-18
Identities = 151/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||||||||| || || || |||||||| || | |||||||| ||||| || |
Sbjct 768241 CAAG-TGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCA 768183
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|| || || ||||| | ||||| || || | | ||||| ||||| || || |
Sbjct 768182 ACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGA 768123
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||||| |||||| | || | | | || ||| ||| || || | || ||||| || |
Sbjct 768122 TCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGTCTTAC 768063
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|||| | ||||| ||||| | ||||||||
Sbjct 768062 CCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820356500130
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