Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq25 141 2e-28 seq12 141 2e-28 seq1 138 2e-27 >seq25 Length=1112461 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 316990 TCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCG 317049 |||||||||||||| ||||| | || | |||| | ||||| ||||| | ||| ||| Sbjct 744273 TCATGCTCAACATACACAGTTCTAAGGACGTCCTGAGATGGGAAACCTTCAACCTGGCCG 744214 Query 317050 TTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATAC 317109 || | || ||| ||| || || ||||| |||||||| || |||||||||||||| || Sbjct 744213 TTAGCCATTGCCTTCAGAAGGGTAGACTTACCAGCACCGTTAGGGCCGCAAAGACCGTAT 744154 Query 317110 CGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCC 317169 | |||| |||||| | | | | ||||||| |||||||||| |||| || ||| Sbjct 744153 CTTCTTCCTCTCTTCAAACGCAGCTGAGATTTGTTCAAAAGAATCTTAGCACCGTAAGCC 744094 Query 317170 AGAGAGAACTCACAATCACACAGGTCCTCGCCG 317202 | |||||||||||| | ||| || ||||| ||| Sbjct 744093 AAAGAGAACTCACAGTTACAAAGATCCTCACCG 744061 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || ||||| |||| ||| || | || || || | ||| || |||||||| Sbjct 695723 TCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAAT 695782 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||| || ||||| ||||| |||||| || || || Sbjct 695783 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTA 695842 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| || || || ||||| ||||| |||||||| || ||||| Sbjct 695843 TCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACA 695902 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 695903 AAGATTTGCATT 695914 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || ||||| |||| ||| || | || || || | ||| || |||||||| Sbjct 695951 TCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAAT 696010 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||| || ||||| ||||| |||||| || || || Sbjct 696011 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTA 696070 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| || || || ||||| ||||| |||||||| || ||||| Sbjct 696071 TCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACA 696130 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 696131 AAGATTTGCATT 696142 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || ||||| |||| ||| || | || || || | ||| || |||||||| Sbjct 696179 TCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAAT 696238 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||| || ||||| ||||| |||||| || || || Sbjct 696239 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTA 696298 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| || || || ||||| ||||| |||||||| || ||||| Sbjct 696299 TCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACA 696358 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 696359 AAGATTTGCATT 696370 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || ||||| |||| ||| || | || || || | ||| || |||||||| Sbjct 696407 TCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAAT 696466 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||| || ||||| ||||| |||||| || || || Sbjct 696467 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTA 696526 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| || || | ||||| ||||| || || || ||||| || Sbjct 696527 TCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACA 696586 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 696587 AAAATTTGCAT 696597 >seq12 Length=1432871 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | | || | ||||||||| | || || || |||||| Sbjct 1192759 TCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAG 1192818 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || || || || || ||||||||||||||||||||| || || | Sbjct 1192819 ATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTG 1192878 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| |||| || || || | ||||| |||||||| ||||||||||||||| Sbjct 1192879 TCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACG 1192938 Query 283089 AATATCTGCATTTTCATA 283106 || || |||||||| ||| Sbjct 1192939 AAAATTTGCATTTTGATA 1192956 >seq1 Length=1856900 Score = 138 bits (152), Expect = 2e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || || ||||||||||||| | || | |||||||| | || || || ||||| Sbjct 768226 TTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAACTGCTTACCAGCAAA 768167 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | ||||| ||| ||||| |||||||| || ||||||||| || || | Sbjct 768166 GATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGATCTTTTGCTTGACATT 768107 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || |||| || || || | ||||| |||||||||||||| |||||||| Sbjct 768106 GTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAAC 768047 Query 283088 GAATATCTGCATTTTCATATA 283108 ||| || |||||||| |||| Sbjct 768046 GAAAATTTGCATTTTTCTATA 768026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738797659620