Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq12 134 3e-26
seq25 132 1e-25
seq1 116 9e-21
>seq12
Length=1432871
Score = 134 bits (148), Expect = 3e-26
Identities = 167/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||||||||| || ||| | || || || || |||||| | ||||||||
Sbjct 1192952 AAAATGC---AAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGAG 1192896
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| |||||||| || || ||||| |||||||| || ||||| || |||||||| ||
Sbjct 1192895 TCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACCA 1192836
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || | ||||| || || || ||| | || ||||| || ||| | | ||
Sbjct 1192835 GATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGAC 1192776
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||| |||| || || || || || || | || |||||| | |||
Sbjct 1192775 TACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGA 1192728
>seq25
Length=1112461
Score = 132 bits (146), Expect = 1e-25
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| | || ||||| || ||||| || ||||| ||| || |||
Sbjct 695910 CAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGAC 695851
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||||||||| || || |||||||| || || ||||||||
Sbjct 695850 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 695791
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || ||||| || || | ||||| ||||| || ||| | ||||| || |
Sbjct 695790 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 695731
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|||||||| ||||| || || |||| ||
Sbjct 695730 CAAAAAGAGTCAACTCTTCA-CTTGGTT 695704
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| | || ||||| || ||||| || ||||| ||| || |||
Sbjct 696138 CAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGAC 696079
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||||||||| || || |||||||| || || ||||||||
Sbjct 696078 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 696019
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || ||||| || || | ||||| ||||| || ||| | ||||| || |
Sbjct 696018 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 695959
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|||||||| || || || |||
Sbjct 695958 CAAAAAGAGTCTACTCTTCAT 695938
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| | || ||||| || ||||| || ||||| ||| || |||
Sbjct 696366 CAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGAC 696307
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||||||||| || || |||||||| || || ||||||||
Sbjct 696306 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 696247
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || ||||| || || | ||||| ||||| || ||| | ||||| || |
Sbjct 696246 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 696187
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|||||||| || || || |||
Sbjct 696186 CAAAAAGAGTCTACTCTTCAT 696166
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||| || | || ||||| || ||||| | ||||| ||| || |||
Sbjct 696594 CAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCTGAC 696535
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||||||||| || || |||||||| || || ||||||||
Sbjct 696534 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 696475
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || ||||| || || | ||||| ||||| || ||| | ||||| || |
Sbjct 696474 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 696415
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|||||||| || || || |||
Sbjct 696414 CAAAAAGAGTCTACTCTTCAT 696394
>seq1
Length=1856900
Score = 116 bits (128), Expect = 9e-21
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||||||||| || || | || || || || |||||| | ||||||||
Sbjct 768032 AAAATGC---AAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAG 768088
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || ||||| || || ||||| |||||||| ||||| || || ||||| || ||
Sbjct 768089 TCTTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCT 768148
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || || || | ||||| || || || ||| | || ||||| || ||| | | ||
Sbjct 768149 GATCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGAC 768208
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||| | || || ||||| || || || | || |||||| | |||
Sbjct 768209 TACAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGA 768256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730737315820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |