Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 134 3e-26 seq25 132 1e-25 seq1 116 9e-21 >seq12 Length=1432871 Score = 134 bits (148), Expect = 3e-26 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || ||| | || || || || |||||| | |||||||| Sbjct 1192952 AAAATGC---AAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGAG 1192896 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||| || || ||||| |||||||| || ||||| || |||||||| || Sbjct 1192895 TCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACCA 1192836 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | ||||| || || || ||| | || ||||| || ||| | | || Sbjct 1192835 GATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGAC 1192776 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| |||| || || || || || || | || |||||| | ||| Sbjct 1192775 TACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGA 1192728 >seq25 Length=1112461 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || ||||| || ||||| || ||||| ||| || ||| Sbjct 695910 CAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGAC 695851 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || |||||||| || || |||||||| Sbjct 695850 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 695791 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| || || | ||||| ||||| || ||| | ||||| || | Sbjct 695790 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 695731 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||| ||||| || || |||| || Sbjct 695730 CAAAAAGAGTCAACTCTTCA-CTTGGTT 695704 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || ||||| || ||||| || ||||| ||| || ||| Sbjct 696138 CAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGAC 696079 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || |||||||| || || |||||||| Sbjct 696078 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 696019 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| || || | ||||| ||||| || ||| | ||||| || | Sbjct 696018 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 695959 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || || || ||| Sbjct 695958 CAAAAAGAGTCTACTCTTCAT 695938 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || ||||| || ||||| || ||||| ||| || ||| Sbjct 696366 CAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCTGAC 696307 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || |||||||| || || |||||||| Sbjct 696306 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 696247 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| || || | ||||| ||||| || ||| | ||||| || | Sbjct 696246 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 696187 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || || || ||| Sbjct 696186 CAAAAAGAGTCTACTCTTCAT 696166 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | || ||||| || ||||| | ||||| ||| || ||| Sbjct 696594 CAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTCTGAC 696535 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || |||||||| || || |||||||| Sbjct 696534 ACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 696475 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| || || | ||||| ||||| || ||| | ||||| || | Sbjct 696474 AGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAATATT 696415 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || || || ||| Sbjct 696414 CAAAAAGAGTCTACTCTTCAT 696394 >seq1 Length=1856900 Score = 116 bits (128), Expect = 9e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || || | || || || || |||||| | |||||||| Sbjct 768032 AAAATGC---AAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAG 768088 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||| || || ||||| |||||||| ||||| || || ||||| || || Sbjct 768089 TCTTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCT 768148 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || || | ||||| || || || ||| | || ||||| || ||| | | || Sbjct 768149 GATCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGAC 768208 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| | || || ||||| || || || | || |||||| | ||| Sbjct 768209 TACAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGA 768256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730737315820