Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq23 132 5e-26 seq12 95.1 1e-14 >seq23 Length=1344041 Score = 132 bits (146), Expect = 5e-26 Identities = 417/642 (65%), Gaps = 17/642 (3%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||| || | | |||||||| ||||| || || ||| || || |||| |||||| Sbjct 977601 GAGAACATCCACAGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTAC 977660 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||||||||| || |||||||| | ||||||| | || || || ||||| || | Sbjct 977661 AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACC 977720 Query 116711 GACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| || |||| | ||| ||| | | |||||| | || ||||||| Sbjct 977721 GACTGGAATGACAAGATGAATGCCAATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTC 977780 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || ||||| || || || ||| | |||||| ||| || || || ||||| Sbjct 977781 TTTGCCGCTTCAGATGGTATTGTCGATGAGAATTTGGCACAGAACTTTATGAAGCAGGTG 977840 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||| | | ||||| | |||||| || || ||||| | |||||| | ||||| Sbjct 977841 CAGTTACCTGAGGCAAGAGCCTTCTATGGTTTCCAGATTATGGTTGAGAACATCCACTCT 977900 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG---- 116943 || | ||||| | ||||| || || | | || || | || |||| Sbjct 977901 GAGACTTATTCCCTTTTGATCGAGACCTATAT---CACTGACAAGAAAGAG-TCCGACTA 977956 Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||||| || |||||| | || || || | || |||||||| ||||| || | Sbjct 977957 CTTGTTCAATGCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAG 978016 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTT---CGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||||| || || | || || | ||| | |||| || || || ||| | Sbjct 978017 ATGGAT---AAACAATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCAT 978073 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 || || || || || || || || ||| |||| || ||| | ||||| | || | Sbjct 978074 TGAAGGTGTGTTTTTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTT 978133 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 ||||| ||||| || ||| |||||||| |||| ||| || |||||||| ||| ||| Sbjct 978134 GATGCCAGGCCTTACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGA 978193 Query 117181 CTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 ||||| || | ||||| || ||| ||| | ||| || Sbjct 978194 TTTTGCATGCCTTTTGTTCTCTCACTTGAAGCATCCACCAAG 978235 >seq12 Length=1682134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || || || || |||||| | || || || | Sbjct 1446028 AAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 1445969 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| |||| || | ||||| ||||| ||||| | || Sbjct 1445968 TCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACCAGAT 1445909 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| || || || ||| |||| || | | || | |||||| Sbjct 1445908 CAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTAC 1445849 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || | || ||| | ||||| || || Sbjct 1445848 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 1445799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219019673280