Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10-
07] 28 sequences; 12,502,959 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq23 158 1e-33
>seq23
Length=1344041
Score = 158 bits (174), Expect = 1e-33
Identities = 563/869 (65%), Gaps = 27/869 (3%)
Strand=Plus/Minus
Query 15958 AACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017
||||||||| ||||||||||| || || || | || || ||||||||||| || || ||
Sbjct 978479 AACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAA 978420
Query 16018 AGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAACAATAATCTATCCGC 16074
||| ||| ||| | ||| || |||||||||||| | | | || || | ||
Sbjct 978419 TGGA-TTTGTGA--CGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGT-CGG 978364
Query 16075 CACA-AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGA 16133
|||| || || | ||||| ||| | ||| ||||||| || | ||| ||| || |
Sbjct 978363 CACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAA 978304
Query 16134 TTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTT---- 16189
|| ||| | | ||| |||| || |||||||| || || | || || ||||||
Sbjct 978303 GAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGAT-TCTCTTGATA 978245
Query 16190 ACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAA 16249
| || || || ||| | || ||||| |||| | || |||||||| |
Sbjct 978244 ATGACCTTACTTGGTGGATGCTT---CAAGTGAGAGAACAAAAGGCATGCAAAATCGGTA 978188
Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309
|| | || || || || | || | |||||| || || ||||| |||||||| | |||
Sbjct 978187 TGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCT 978128
Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369
| || || | ||| || || | |||||| || ||||| || || | |||||||| ||
Sbjct 978127 CTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCA 978068
Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429
||||| |||||||||| |||| | ||| || | | | | ||||||| | ||||
Sbjct 978067 GCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCC 978008
Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489
|| || || | |||| | || | | || ||||| || || || |
Sbjct 978007 CATAAAGCCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGAC 977948
Query 16490 tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549
||||| | || ||||| || || || | | ||| | || || || || |||
Sbjct 977947 TCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTC 977888
Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG----TACTTCAGA 16605
|| | ||||| |||||||| ||| ||| || || | || || | |||||
Sbjct 977887 TCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCA-- 977830
Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665
||| | | ||| || || || | || || ||||| ||| ||||| || || |
Sbjct 977829 --TAAAGTTCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAA 977772
Query 16666 TATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTTAA--CCAGTCAGAAAAATC 16722
| | || || | | | || || | | | || | | |||||| | |||||
Sbjct 977771 GACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATC 977712
Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782
||||| | ||||| ||| || ||||||| ||||| || | ||||| || |||||||
Sbjct 977711 CTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTG 977652
Query 16783 CCATATGTCTTCGTAAACAATAGGAAACA 16811
|||||| || ||||| |||||| ||||
Sbjct 977651 CCATATATCATCGTACTGAATAGGGAACA 977623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511838120800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |