Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10-
07] 28 sequences; 12,502,959 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq22 159 3e-34
seq23 152 5e-32
seq12 145 7e-30
seq1 105 6e-18
>seq22
Length=1510904
Score = 159 bits (176), Expect = 3e-34
Identities = 421/635 (66%), Gaps = 6/635 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||| |||| ||||| ||||| | |||||| ||||| | |||||| |||| |||| ||
Sbjct 295582 GAGCCAAGGTTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAG 295523
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCG-ATTGCACGAATC 23145
|||||| |||| || || || | || |||| || | |||| ||||||||||||
Sbjct 295522 AGATTGGACGACTTGATGGTTCCAAGGTTCTTCTGATT-CGACTTCGCATTGCACGAATC 295464
Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG-CTCGCCACA 23204
||| || || | | | ||||| || |||||| ||| || | | ||| ||| |||||
Sbjct 295463 CTTATAAAGGAGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTC-CCACA 295405
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264
| | || | | | || | |||| |||||||| ||||||| | ||||| |
Sbjct 295404 CCTTGCGGGCCTTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGG 295345
Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACACATGAGA 23323
||||| |||| ||| | ||| | || || || | | | ||| | | | ||||
Sbjct 295344 ATTCAAACTCGGGACCCCATTTGTCTGATAGTCCTGGTGCT-GTATCCTCAGAAAAGAGA 295286
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||||||| || || | || || ||||| || || ||||| ||||| | || ||
Sbjct 295285 CTCCACATCTCATCGTTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAA 295226
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || || | || |||| ||||| |||||| |||||| || | || | || |||
Sbjct 295225 AAGAGATCCCTTGCCCGCATTTCCTCCTTGCCGTGGTTCTTCTTGAGGTCGAGGAATTCC 295166
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
| | ||||||||||| ||||| || || | | || || || | ||| || ||
Sbjct 295165 AGAATATCCGCATGCCAGGGCTCAAGATACGCACATATTGCACCAGGACGCTTGTTTCCA 295106
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| || ||||| || ||| |||| |||| || ||||| || || | || |
Sbjct 295105 CCCTGGTCAACGTACTTTGCTGTGCTGTTAAACACCCTGAGCATGGGAACAATGCCACTT 295046
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|||| ||| ||| | | || || || ||| |||||| | ||| |
Sbjct 295045 GACGTTCCGTTGGTGCCAGAAATGTACGTTCCAGCTGTTCGGACGTTGCTCAGGTGCATT 294986
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658
||||| || ||| | | ||| |||||||| |||||
Sbjct 294985 CCTATTCCACCGGCAGCTTTTGATATCATTGCGCA 294951
>seq23
Length=1344041
Score = 152 bits (168), Expect = 5e-32
Identities = 595/922 (65%), Gaps = 24/922 (3%)
Strand=Plus/Plus
Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596
||||| || ||||| || ||| | || || || ||| | |||||||| ||||| ||
Sbjct 977613 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 977672
Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656
|| || || ||||| | ||| || | || || || |||||| ||| ||| ||| || |
Sbjct 977673 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 977732
Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713
| || | ||||||| | || || | || ||||| || || ||||| ||
Sbjct 977733 AAGATGAATGCCAATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTCA 977792
Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG-AAGTGCAAGTGACGGA 57772
||||||||||| | |||||||||| | | | ||| ||| | ||||| | | ||
Sbjct 977793 GATGGTATTGTCGATGAGAATTTGG-CACAGAACTTTATGAAGCAGGTGCAGTTACCTGA 977851
Query 57773 GGCGAGATGCTTTTACGGATTTCAAG----TGGCCATTGAAAACGTGCATTCAGAAATGT 57828
||| ||| ||| || || |||| || ||| |||| ||| | || || || | |
Sbjct 977852 GGCAAGAGCCTTCTATGG-TTTCCAGATTATGG---TTGAGAACATCCACTCTGAGACTT 977907
Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAAC 57887
|||| || | ||||| || || | | ||||| | ||| || || |||||||
Sbjct 977908 ATTCCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAG-TCCGACTACTTGTTCAAT 977966
Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947
|| ||| | ||||| || | || ||||||| ||| | | | |||||||||
Sbjct 977967 GCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAAC 978026
Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007
| | || || || ||||| | | || || || ||| | |||||| | ||
Sbjct 978027 AATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTT 978086
Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067
|| || || ||||| | || || ||| ||||||| | || ||||||| |||||
Sbjct 978087 TTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTT 978146
Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127
||||| |||||| | || | | || |||||||| ||||| |||||||| |||||
Sbjct 978147 ACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATGCCTT 978206
Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAG 58187
||| ||||||| | || ||| | || ||| | || || ||||||
Sbjct 978207 TTGTTCTCTCACTTGAAGCATCCACCAAGTAAGGTCATTATCAAGAGAATCATGACCGAG 978266
Query 58188 GCGGTCGCGATCGAAAATGAGTTTGT-CACCGAAGCCCTACCGGTGGCCATGCTCGGTAT 58246
|| || || || || | ||| | | || || || || || | | ||||||||
Sbjct 978267 GCTGTTAATATTGAGAA-AACTTTCTGGAGAGACGCTCTTCCAGTTTCTTTACTCGGTAT 978325
Query 58247 GAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306
|||| ||| ||||| | ||||| ||||||| ||||||||| | | ||| | |
Sbjct 978326 GAACTTCGATATGATGGCTCAGTACGTTGAGTTCTGTGCCGACAGGTTGCTTATCGCATT 978385
Query 58307 --GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCG 58364
||| |||| || ||||||| | |||||| || || || ||| | |||||
Sbjct 978386 GGGATGCGAGAAGGT--TTACAACGTCACAAATCCATTCGACTTCATGGAAAATATCTCC 978443
Query 58365 CTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTG 58424
| | || ||||| || || || || || | |||| ||| || || || ||| ||
Sbjct 978444 TTGGCTGGTAAGACTAATTTCTTTGAGAAGAGAGTTTCCGACTACCAGAAGGCCGGTGTT 978503
Query 58425 ATGAGCGGTAACAAGTTGGAGG 58446
||| | || |||||||||
Sbjct 978504 ATG---GCCAAGGAGTTGGAGG 978522
>seq12
Length=1682134
Score = 145 bits (160), Expect = 7e-30
Identities = 350/522 (67%), Gaps = 11/522 (2%)
Strand=Plus/Plus
Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213
|| ||||| || || |||| ||| ||||||| | ||||| || || || ||||||||
Sbjct 1114892 TAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 1114951
Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273
|| | | || | | || | | || | || ||| ||| ||| | || ||
Sbjct 1114952 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 1115011
Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333
| ||| || ||||||| || | | | || || ||||| || ||| ||||||
Sbjct 1115012 CTATCAGCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 1115071
Query 22334 TGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392
| | |||||| || ||| | || || | | |||| | || ||||| | ||| |||||
Sbjct 1115072 TTCTTGATCT-TATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGAT 1115130
Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452
|| || || || | ||||||||| | || ||| | | | |||| | | || | | |
Sbjct 1115131 GAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGG 1115190
Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACG 22511
|| || | || || || || | ||||| | | | || || ||||| || ||||| |
Sbjct 1115191 ATTAACGATCTGGAATTCACCAG-CAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATG 1115249
Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571
|||||||| |||| || | |||| ||||| | || ||||| |||||||| || ||||
Sbjct 1115250 GTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCA 1115309
Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGTC 22629
|| || |||||||| | || ||| | ||| ||| ||| ||| ||| ||||||
Sbjct 1115310 CCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGCCTTCAGAGTATC--CCAGTC 1115367
Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671
||||||||| | ||| | |||| ||||||||| |||||
Sbjct 1115368 CCACAGATCCGTAGGCTT---TTTGTTCCACATATCATATTG 1115406
Score = 107 bits (118), Expect = 2e-18
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245
|||||| |||||||||||||| |||||| |||| || || || |||||| | || || ||
Sbjct 1446031 ATCAAA-ATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGA 1445973
Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305
| ||||||| | || | ||||| || | || |||||||| || | || ||
Sbjct 1445972 GTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACC 1445913
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365
|| |||||| | | || || ||||| || |||||||| || | ||| || ||
Sbjct 1445912 AGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGA 1445853
Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAA 31424
|| ||||| || || || || |||||||| |||| | ||| |||| || ||| ||||
Sbjct 1445852 CTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAA 1445793
Query 31425 G 31425
|
Sbjct 1445792 G 1445792
>seq1
Length=1824870
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| |||||||||||||| ||||| |||| || || || |||||| | || || || |
Sbjct 737922 AAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTC 737981
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | | || | ||||| || | || ||| ||||| || | || || ||
Sbjct 737982 TTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGA 738041
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|| ||| | | || || ||||| || |||||||| || || ||| || || ||
Sbjct 738042 TCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTA 738101
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || ||||| |||||||| |||| | ||| |||| || ||||
Sbjct 738102 CAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGGTA 738154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766243981760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |