Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22 159 3e-34 seq23 152 5e-32 seq12 145 7e-30 seq1 105 6e-18 >seq22 Length=1510904 Score = 159 bits (176), Expect = 3e-34 Identities = 421/635 (66%), Gaps = 6/635 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||| |||| ||||| ||||| | |||||| ||||| | |||||| |||| |||| || Sbjct 295582 GAGCCAAGGTTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAG 295523 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCG-ATTGCACGAATC 23145 |||||| |||| || || || | || |||| || | |||| |||||||||||| Sbjct 295522 AGATTGGACGACTTGATGGTTCCAAGGTTCTTCTGATT-CGACTTCGCATTGCACGAATC 295464 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG-CTCGCCACA 23204 ||| || || | | | ||||| || |||||| ||| || | | ||| ||| ||||| Sbjct 295463 CTTATAAAGGAGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTC-CCACA 295405 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264 | | || | | | || | |||| |||||||| ||||||| | ||||| | Sbjct 295404 CCTTGCGGGCCTTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGG 295345 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACACATGAGA 23323 ||||| |||| ||| | ||| | || || || | | | ||| | | | |||| Sbjct 295344 ATTCAAACTCGGGACCCCATTTGTCTGATAGTCCTGGTGCT-GTATCCTCAGAAAAGAGA 295286 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||||||| || || | || || ||||| || || ||||| ||||| | || || Sbjct 295285 CTCCACATCTCATCGTTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAA 295226 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || || | || |||| ||||| |||||| |||||| || | || | || ||| Sbjct 295225 AAGAGATCCCTTGCCCGCATTTCCTCCTTGCCGTGGTTCTTCTTGAGGTCGAGGAATTCC 295166 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 | | ||||||||||| ||||| || || | | || || || | ||| || || Sbjct 295165 AGAATATCCGCATGCCAGGGCTCAAGATACGCACATATTGCACCAGGACGCTTGTTTCCA 295106 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| || ||||| || ||| |||| |||| || ||||| || || | || | Sbjct 295105 CCCTGGTCAACGTACTTTGCTGTGCTGTTAAACACCCTGAGCATGGGAACAATGCCACTT 295046 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 |||| ||| ||| | | || || || ||| |||||| | ||| | Sbjct 295045 GACGTTCCGTTGGTGCCAGAAATGTACGTTCCAGCTGTTCGGACGTTGCTCAGGTGCATT 294986 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 ||||| || ||| | | ||| |||||||| ||||| Sbjct 294985 CCTATTCCACCGGCAGCTTTTGATATCATTGCGCA 294951 >seq23 Length=1344041 Score = 152 bits (168), Expect = 5e-32 Identities = 595/922 (65%), Gaps = 24/922 (3%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 ||||| || ||||| || ||| | || || || ||| | |||||||| ||||| || Sbjct 977613 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 977672 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || || ||||| | ||| || | || || || |||||| ||| ||| ||| || | Sbjct 977673 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 977732 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || | ||||||| | || || | || ||||| || || ||||| || Sbjct 977733 AAGATGAATGCCAATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTCA 977792 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG-AAGTGCAAGTGACGGA 57772 ||||||||||| | |||||||||| | | | ||| ||| | ||||| | | || Sbjct 977793 GATGGTATTGTCGATGAGAATTTGG-CACAGAACTTTATGAAGCAGGTGCAGTTACCTGA 977851 Query 57773 GGCGAGATGCTTTTACGGATTTCAAG----TGGCCATTGAAAACGTGCATTCAGAAATGT 57828 ||| ||| ||| || || |||| || ||| |||| ||| | || || || | | Sbjct 977852 GGCAAGAGCCTTCTATGG-TTTCCAGATTATGG---TTGAGAACATCCACTCTGAGACTT 977907 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAAC 57887 |||| || | ||||| || || | | ||||| | ||| || || ||||||| Sbjct 977908 ATTCCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAG-TCCGACTACTTGTTCAAT 977966 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || ||| | ||||| || | || ||||||| ||| | | | ||||||||| Sbjct 977967 GCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAAC 978026 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | | || || || ||||| | | || || || ||| | |||||| | || Sbjct 978027 AATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTT 978086 Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 || || || ||||| | || || ||| ||||||| | || ||||||| ||||| Sbjct 978087 TTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTT 978146 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 ||||| |||||| | || | | || |||||||| ||||| |||||||| ||||| Sbjct 978147 ACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATGCCTT 978206 Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAG 58187 ||| ||||||| | || ||| | || ||| | || || |||||| Sbjct 978207 TTGTTCTCTCACTTGAAGCATCCACCAAGTAAGGTCATTATCAAGAGAATCATGACCGAG 978266 Query 58188 GCGGTCGCGATCGAAAATGAGTTTGT-CACCGAAGCCCTACCGGTGGCCATGCTCGGTAT 58246 || || || || || | ||| | | || || || || || | | |||||||| Sbjct 978267 GCTGTTAATATTGAGAA-AACTTTCTGGAGAGACGCTCTTCCAGTTTCTTTACTCGGTAT 978325 Query 58247 GAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306 |||| ||| ||||| | ||||| ||||||| ||||||||| | | ||| | | Sbjct 978326 GAACTTCGATATGATGGCTCAGTACGTTGAGTTCTGTGCCGACAGGTTGCTTATCGCATT 978385 Query 58307 --GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCG 58364 ||| |||| || ||||||| | |||||| || || || ||| | ||||| Sbjct 978386 GGGATGCGAGAAGGT--TTACAACGTCACAAATCCATTCGACTTCATGGAAAATATCTCC 978443 Query 58365 CTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTG 58424 | | || ||||| || || || || || | |||| ||| || || || ||| || Sbjct 978444 TTGGCTGGTAAGACTAATTTCTTTGAGAAGAGAGTTTCCGACTACCAGAAGGCCGGTGTT 978503 Query 58425 ATGAGCGGTAACAAGTTGGAGG 58446 ||| | || ||||||||| Sbjct 978504 ATG---GCCAAGGAGTTGGAGG 978522 >seq12 Length=1682134 Score = 145 bits (160), Expect = 7e-30 Identities = 350/522 (67%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || || |||| ||| ||||||| | ||||| || || || |||||||| Sbjct 1114892 TAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 1114951 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 || | | || | | || | | || | || ||| ||| ||| | || || Sbjct 1114952 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 1115011 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333 | ||| || ||||||| || | | | || || ||||| || ||| |||||| Sbjct 1115012 CTATCAGCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 1115071 Query 22334 TGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392 | | |||||| || ||| | || || | | |||| | || ||||| | ||| ||||| Sbjct 1115072 TTCTTGATCT-TATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGAT 1115130 Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452 || || || || | ||||||||| | || ||| | | | |||| | | || | | | Sbjct 1115131 GAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGG 1115190 Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 || || | || || || || | ||||| | | | || || ||||| || ||||| | Sbjct 1115191 ATTAACGATCTGGAATTCACCAG-CAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATG 1115249 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 |||||||| |||| || | |||| ||||| | || ||||| |||||||| || |||| Sbjct 1115250 GTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCA 1115309 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGTC 22629 || || |||||||| | || ||| | ||| ||| ||| ||| ||| |||||| Sbjct 1115310 CCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGCCTTCAGAGTATC--CCAGTC 1115367 Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||||||||| | ||| | |||| ||||||||| ||||| Sbjct 1115368 CCACAGATCCGTAGGCTT---TTTGTTCCACATATCATATTG 1115406 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| |||||||||||||| |||||| |||| || || || |||||| | || || || Sbjct 1446031 ATCAAA-ATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGA 1445973 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | ||||||| | || | ||||| || | || |||||||| || | || || Sbjct 1445972 GTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACC 1445913 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 || |||||| | | || || ||||| || |||||||| || | ||| || || Sbjct 1445912 AGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGA 1445853 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAA 31424 || ||||| || || || || |||||||| |||| | ||| |||| || ||| |||| Sbjct 1445852 CTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAA 1445793 Query 31425 G 31425 | Sbjct 1445792 G 1445792 >seq1 Length=1824870 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||||||||| ||||| |||| || || || |||||| | || || || | Sbjct 737922 AAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTC 737981 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | || | ||||| || | || ||| ||||| || | || || || Sbjct 737982 TTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGA 738041 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || ||| | | || || ||||| || |||||||| || || ||| || || || Sbjct 738042 TCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTA 738101 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || ||||| |||||||| |||| | ||| |||| || |||| Sbjct 738102 CAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGGTA 738154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766243981760