Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12 390 1e-103 seq23 185 1e-41 >seq12 Length=1682134 Score = 390 bits (432), Expect = 1e-103 Identities = 1399/2146 (65%), Gaps = 77/2146 (4%) Strand=Plus/Plus Query 62046 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 62102 |||||||| |||| |||||| || || ||||||| |||||||| || ||||| Sbjct 1114853 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTTTTC 1114909 Query 62103 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 62161 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 1114910 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 1114969 Query 62162 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 62221 | |||||| |||||||||||| || |||| | || ||||| || |||||||| | Sbjct 1114970 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATATC 1115028 Query 62222 TATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 62280 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 1115029 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 1115087 Query 62281 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 62337 ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 1115088 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 1115147 Query 62338 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATT 62397 | ||||||| | | || | | | |||| | | | || ||||| | ||||||| Sbjct 1115148 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 1115207 Query 62398 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62457 | |||| | ||||| | || || ||| ||| | ||||| | | || |||| Sbjct 1115208 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 1115267 Query 62458 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 1115268 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 1115327 Query 62518 GACC-GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG---- 62572 |||| || | | || ||| | || ||| ||||| | ||| ||||||| || Sbjct 1115328 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 1115386 Query 62573 ---TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62629 | | ||| ||||||||||||||| || || || ||| |||| Sbjct 1115387 TTGTTCCACATATC-------ATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATA 1115439 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTT--TACAACTCGCCTCTAATGCACCGTAA 62687 ||| | ||| | || || | | |||| || | | | || ||| |||||| ||| | Sbjct 1115440 TGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTC--CTCCAATGCAGCGTGA 1115497 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || | ||| ||||| |||| | || || || |||| || || | ||||| || || Sbjct 1115498 TACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAG 1115556 Query 62748 TTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | |||| | | || | || || | || || | ||||| | | |||||||| | ||| Sbjct 1115557 TCTAAGCATGAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCT 1115616 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | | || ||| | || || |||| ||||| ||||| | || |||| || | Sbjct 1115617 CATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAA 1115676 Query 62867 ATTTCTG---ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--AT 62915 || | | |||| ||| | ||| || | || | |||| | | ||| || Sbjct 1115677 GTTACGGGTAACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGAT 1115735 Query 62916 CGCCCATCT-ATT--ACAAA--CATGTTCAATGCAACAGATG-CCAGATTACACACGGCT 62969 | | ||||| | | ||||| || | ||| ||| | || ||| |||||||| | Sbjct 1115736 C-CTCATCTGACTCAACAAAGGCAGG--CAAA-CAAATGTTGGCCAAGTTACACACACCA 1115791 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 ||||||| | | | || | | | |||| ||| | || | | ||||| || Sbjct 1115792 ACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTA 1115851 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || || || | |||||||||||| | ||||| |||||||| || | ||||| || ||| Sbjct 1115852 CCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTA 1115911 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGA 63148 |||||||| |||||| || | |||| | ||| | | || ||||||| | | | Sbjct 1115912 CCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCT 1115970 Query 63149 T-TTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 | || | ||||| || | ||||| |||| |||||| ||||||||||| || ||| Sbjct 1115971 TCTTCCACGTCCTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAA 1116029 Query 63208 CAT-TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 ||| || | || | | | || ||| | | ||| | ||||| ||| || | Sbjct 1116030 CATCTGAGAGACCTGGTGCCT-CAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCC 1116088 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || |||||||| | ||| ||||||||||||||| ||| | ||| | || | | Sbjct 1116089 ACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATC 1116148 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || ||||||| | | ||||| || | | ||||||| |||||| || Sbjct 1116149 TCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGC 1116208 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 |||||||| || || || | || || | ||||| || || ||||| | |||||||| Sbjct 1116209 TCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCA 1116268 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 || | || | || | | ||| ||||| |||||||| ||| ||||||| ||||||| Sbjct 1116269 GTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCA 1116328 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTT 63565 ||||| ||| ||| |||||| || ||| ||| ||||| || || || || | || Sbjct 1116329 ATATACGAACCAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTT 1116387 Query 63566 AGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT 63625 ||| || || || || |||| || || || ||||| ||||| || ||||| |||| Sbjct 1116388 AGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCAT 1116447 Query 63626 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGG 63685 || || || || ||||| || | || | ||| || ||||| || || || || Sbjct 1116448 TGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGG 1116507 Query 63686 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTA 63744 || || || || || || | | || | | | || | | ||| | || || | Sbjct 1116508 TGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAA 1116566 Query 63745 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||| || || || || | ||| | | ||| || ||||||||| ||| Sbjct 1116567 TATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAA 1116626 Query 63805 TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63864 || || ||| |||||| || || ||||||||| || |||||||| ||||||| Sbjct 1116627 CCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGT 1116686 Query 63865 ATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTA 63924 | ||||| || |||||| |||| | || || | || |||||||| | |||| | Sbjct 1116687 AACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAACAA 1116746 Query 63925 TATCCATGGTAATACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63980 | | ||| || ||||| || ||||| | ||| | || ||||| Sbjct 1116747 T----CTTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAG 1116802 Query 63981 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 64040 |||||| ||| |||||| || || ||| || | || || || | |||||| | |||| Sbjct 1116803 TAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTT 1116862 Query 64041 GATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGC 64099 || || || | ||| ||||| | | | ||||| || ||||| ||| || || || || Sbjct 1116863 GAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGC 1116921 Query 64100 TGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 64145 ||| |||| || | || | ||||||| || | || || || ||| Sbjct 1116922 TGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 1116967 >seq23 Length=1344041 Score = 185 bits (204), Expect = 1e-41 Identities = 568/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 33312 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33371 || || || |||||||| || || |||| || |||||||||||||| || || ||||| Sbjct 978472 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 978413 Query 33372 GTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCT 33431 || || ||||||| || | |||||||| | || ||| || || || ||| || Sbjct 978412 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 978353 Query 33432 ATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA 33491 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 978352 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 978293 Query 33492 -AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACT 33550 ||||| | || | |||| || || | || || || | | | | | ||| Sbjct 978292 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTACT 978234 Query 33551 CGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTC 33610 |||||||| || || |||| | ||||| |||||| || |||||||| || Sbjct 978233 TGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATC 978174 Query 33611 TCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33670 ||| | || | |||||||| ||||| || || ||||| | || | ||| || | ||| Sbjct 978173 TCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCA 978114 Query 33671 AAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || ||||| || || ||||| || || || | ||||| | |||||||| |||| | Sbjct 978113 GAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAA 978054 Query 33731 TCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||||| |||| || |||| |||||| | |||||| ||||||| Sbjct 978053 TCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCTC 977994 Query 33788 TTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33847 || | | || || || | |||||||| || | |||| || || | || | Sbjct 977993 CTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAGT 977934 Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 | ||| || ||||||||||| ||| | || || || ||||| |||| ||||| Sbjct 977933 GATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTG 977874 Query 33908 AAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTG-TACAAAATCGTTC--TG 33963 || || ||||| ||| ||||| ||||| |||||| ||| | || || |||| || Sbjct 977873 GAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGTG 977818 Query 33964 CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 34023 | ||||| |||| || || ||||| || ||||| || ||||| ||| | || | Sbjct 977817 CCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATGA 977758 Query 34024 AATATTTTTCGTCTGGTGTTAGT----TTATTCCAATCATTGATATCTTTAGATATATCC 34079 | ||| | || | ||| || | | |||||| || | | ||| || || | ||| Sbjct 977757 AGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 977699 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 977698 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 977639 Query 34140 TATTGGATTGGGAAAATAACAAATCT 34165 || || || ||||| || || ||||| Sbjct 977638 TACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817379563840