Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq12 165 8e-36 seq23 107 2e-18 >seq12 Length=1682134 Score = 165 bits (182), Expect = 8e-36 Identities = 358/536 (67%), Gaps = 0/536 (0%) Strand=Plus/Plus Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTA 38073 || || || | |||||||||||| || | ||| | || | ||| ||||| | | | Sbjct 1116086 TCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGA 1116145 Query 38074 TATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCAT 38133 || || || || ||||||||| | | ||| ||||| |||||||| ||||| Sbjct 1116146 ATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAA 1116205 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 || || | ||||| | || || |||||||| || | ||| || |||| | ||||||| Sbjct 1116206 GGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTA 1116265 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 | || | || | | | | ||| || | |||||| || ||| | || || ||||| Sbjct 1116266 GCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCG 1116325 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 | ||||| | ||| | | || || || || | || || ||||| ||| Sbjct 1116326 GCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTC 1116385 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || || || ||||| || ||||| || ||||| | |||||||| ||| |||||| || Sbjct 1116386 TTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTC 1116445 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 |||| | || || || ||||| ||||| |||||| || || || || || || Sbjct 1116446 ATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTT 1116505 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493 || ||||||||| |||| || | | |||| | | ||||| ||| | || | | Sbjct 1116506 GGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGA 1116565 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||| | || |||||||| | | || ||||| || | |||||||||||||| Sbjct 1116566 ATATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTC 1116621 >seq23 Length=1344041 Score = 107 bits (118), Expect = 2e-18 Identities = 548/868 (63%), Gaps = 28/868 (3%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || |||||||||||||| | | || |||| ||||| ||| || ||||| Sbjct 978469 TCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTTGTG 978410 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| | || || || || || || | | | || || || || ||| || | Sbjct 978409 ACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCAACG 978350 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 ||||||| ||| | | | |||||||| | | | || |||| ||| || || | Sbjct 978349 TACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTCCAG 978290 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGT 11602 || || || |||||||| || || | || || | | |||| ||||| |||| Sbjct 978289 AAAGTTTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTACTTGGT 978230 Query 11603 GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTA 11662 ||||| || || |||| | || |||||||| ||||| ||| || ||||| Sbjct 978229 GGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATCTCTG 978170 Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722 | || || || ||||| || || | || |||||||| |||| || || | ||| || Sbjct 978169 CAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCAGAAG 978110 Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782 || | ||||| || ||||| || || | || || | || ||||| || || | ||| Sbjct 978109 ATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAATCTC 978050 Query 11783 TCTCCATATA------CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTT 11836 || |||| | | | ||| | ||||||| | ||||| ||| |||| Sbjct 978049 TCAGCATACAAAGCATCATCATTGTT---TATCCATCTCAAAGCCCATAAAGCCTTCTCC 977993 Query 11837 TTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT----GCATTTTTTCTATATTATC 11892 || | | ||||| | || || || || || | | | | |||| || || Sbjct 977992 TTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTC----TTGTC 977937 Query 11893 TCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTT---CCATAGC 11949 | | ||| || || || || | ||| | || || || || || | ||||| Sbjct 977936 AGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATA-- 977879 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT-CCACATAAAATCTTT 12008 || || || |||||||| || |||||| | |||| || | | |||||| | | | Sbjct 977878 -ATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT-TCT 977821 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || |||||||||| ||||||||||| || ||||| || || | | | | | Sbjct 977820 GTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGA 977761 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAAT 12125 | |||||| | || | | || | | || ||| || ||||| ||||| | || Sbjct 977760 TGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGAT 977701 Query 12126 CTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCAT 12185 | | || || | ||||| ||| ||| | | | || ||||||| ||| ||||||| Sbjct 977700 CGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCAT 977641 Query 12186 GATACTTAATAGGGAAAATAACGAACCT 12213 |||| ||||||||| || ||||| || Sbjct 977640 CGTACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524636016320