Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12 360 3e-94 seq23 185 1e-41 >seq12 Length=1682134 Score = 360 bits (398), Expect = 3e-94 Identities = 1383/2136 (65%), Gaps = 57/2136 (3%) Strand=Plus/Plus Query 64839 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 64895 |||||||| |||| |||||| || || ||||||| |||||||| || ||||| Sbjct 1114853 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTTTTC 1114909 Query 64896 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 64954 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 1114910 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 1114969 Query 64955 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 65014 | |||||| |||||||||||| || |||| | || ||||| || |||||||| | Sbjct 1114970 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATATC 1115028 Query 65015 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 65073 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 1115029 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 1115087 Query 65074 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 65130 ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 1115088 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 1115147 Query 65131 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 65190 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 1115148 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 1115207 Query 65191 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 65250 | |||| | ||||| | || || ||| ||| | ||||| | | | || |||| Sbjct 1115208 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 1115267 Query 65251 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 1115268 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 1115327 Query 65311 GACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA 65369 |||| || | | || ||| | || |||| ||||| | ||| ||||||| || Sbjct 1115328 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 1115386 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429 |||||||||||| || || || ||| ||||||| | Sbjct 1115387 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 1115446 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 || | || || | | |||| || | |||| |||||| ||| ||| | ||| Sbjct 1115447 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 1115506 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AG 65548 || || |||| | || || || |||| || | | ||||| || || | |||| | Sbjct 1115507 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 1115565 Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 1115566 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 1115625 Query 65609 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-- 65666 | | || || |||| ||||| ||||| | || |||| || | || | | Sbjct 1115626 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 1115685 Query 65667 -ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCTCATCT 65717 |||| ||| | ||| || | || | |||| | | ||| ||| ||||||| Sbjct 1115686 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATC-CTCATCT 1115743 Query 65718 -ATT--ACAAA--CATGTTCAATGCAACAGATG-CCAGATTACAAACGGCTACCTCATTA 65771 | | ||||| || | ||| ||| | || ||| ||||| || | ||||||| Sbjct 1115744 GACTCAACAAAGGCAGG--CAAA-CAAATGTTGGCCAAGTTACACACACCAACCTCATCT 1115800 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | | || | | | |||| ||| | || | | |||||||| || || || Sbjct 1115801 GGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTC 1115860 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 | |||||||||||| | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 1115861 TTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCT 1115920 Query 65892 ATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGAT-TTGTATC 65949 |||||| || | |||| | ||| || || ||||||| | | | | || | Sbjct 1115921 GTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCTTCTTCCACG 1115979 Query 65950 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009 || |||| | ||||| | || |||||| ||||||||||| || |||||| | Sbjct 1115980 TC-CTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGA 1116038 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 || || ||| ||| | | ||| | ||||| ||| || ||| || |||| Sbjct 1116039 GACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCA 1116098 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 |||| | ||| ||||||||||||||| ||| ||||| | | | | ||||| || | Sbjct 1116099 TAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTAC 1116158 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | ||||||| | | ||||| || | | |||||| |||||| || |||||||| | Sbjct 1116159 CATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAA 1116218 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || || | || || | ||||| || || ||||| | |||||||| || | || Sbjct 1116219 TAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGA 1116278 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | | ||| ||||| ||||| |||||||||||||| || |||| ||||| | Sbjct 1116279 ACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAAC 1116338 Query 66310 CACTTGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 || | | |||||| || ||| ||| ||||| || || || || | ||||| || || Sbjct 1116339 CAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAATCAAA 1116397 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 || || |||| || ||||| ||||| || || ||| ||||| |||| || || Sbjct 1116398 GCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAG 1116457 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || || ||||| || | || ||| || ||||| || || || || || || || Sbjct 1116458 AAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGT 1116517 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATATCCCATTG 66547 || || || | | || | | | || | | ||| | || || ||||| Sbjct 1116518 GTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAATATCATCACC 1116576 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 |||||| || || || || | ||| | | ||| || ||||||||| | | ||| || Sbjct 1116577 ATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATT 1116636 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 ||| |||||| || || ||||||||| || |||||||| |||||||| ||||| Sbjct 1116637 AATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGAAGTC 1116696 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 66727 || |||||| |||| | ||||| | | |||||||| | |||| ||| | | Sbjct 1116697 ACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAAC--AATC--TTAT 1116752 Query 66728 AATACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATA 66783 || || ||||| || ||||| | ||| | || |||||| |||||| ||| Sbjct 1116753 AAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTGTATA 1116812 Query 66784 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 66843 |||||| || || ||| || | || || || | ||||| | |||||| | || | Sbjct 1116813 GATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATTGCAA 1116872 Query 66844 TTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCG 66902 ||||||||| | | | ||||| || ||||| ||| || || || ||||| |||| Sbjct 1116873 GTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGTTTCA 1116931 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 66938 || | || | ||||||| || | || || || ||| Sbjct 1116932 GCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 1116967 >seq23 Length=1344041 Score = 185 bits (204), Expect = 1e-41 Identities = 569/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 35888 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 35947 || || || |||||||| ||||| | || || |||||||||||||| ||||||||||| Sbjct 978472 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 978413 Query 35948 ATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AATTC 36006 | || || |||| || | |||||||| | || ||| || || || ||| || || Sbjct 978412 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGC-ACAGAACTC 978354 Query 36007 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 36066 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 978353 AACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCT 978294 Query 36067 A-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCAC 36125 ||||| | || | ||||| || || || || || || | | | | | || Sbjct 978293 CCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTAC 978235 Query 36126 TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGT 36185 | ||||||| | || || |||| | ||||| |||||| ||||||||||| | Sbjct 978234 TTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCAT 978175 Query 36186 CTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 36245 |||| | || | ||||| || ||||| || || ||||| | || | ||| || | || Sbjct 978174 CTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACC 978115 Query 36246 AAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAA 36305 | || ||||| ||||| |||||||| || || | ||||| | || ||||| |||| | Sbjct 978114 AGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCA 978055 Query 36306 GTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCT 36362 |||||| |||| ||| ||| | |||||| | |||||| ||||||| Sbjct 978054 ATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCT 977995 Query 36363 TTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTT 36422 || | | || ||||| | || ||||| || | |||| || || | || Sbjct 977994 CCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAG 977935 Query 36423 TAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTT 36482 | | ||| || || |||||||| ||| | || || || ||||| |||| || | Sbjct 977934 TGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCT 977875 Query 36483 GAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCTG-TACAAAATCGTTC--T 36538 | || || ||||| ||| ||||| ||||| ||| || ||| | || || |||| | Sbjct 977874 GGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGT 977819 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 || ||||| |||| || || || || || ||||| || ||||| ||| | || Sbjct 977818 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 977759 Query 36599 AAATATTTTTCGTTTGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCC 36655 || ||| | || || | | | || |||||| || | | ||| || || | ||| Sbjct 977758 AAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 977699 Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 977698 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 977639 Query 36716 TATTGAATTGGAAAAATAACAAATCT 36741 || ||||| || || || || ||||| Sbjct 977638 TACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172569639520