Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12 370 2e-97 seq23 185 1e-41 >seq12 Length=1682134 Score = 370 bits (410), Expect = 2e-97 Identities = 1389/2140 (65%), Gaps = 65/2140 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 78774 |||||||| |||| |||||| || || ||||||| |||||||| || ||||| Sbjct 1114853 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTTTTC 1114909 Query 78775 AGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 78833 | || |||| || || || ||||| || | ||| ||| | | |||| Sbjct 1114910 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 1114969 Query 78834 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 78893 | |||||| |||||||||||| || |||| | || ||||| || |||||||| | Sbjct 1114970 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATATC 1115028 Query 78894 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 78952 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 1115029 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 1115087 Query 78953 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTT 79009 ||| ||||| |||||||| || || || || || ||||| || | | Sbjct 1115088 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 1115147 Query 79010 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 79069 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 1115148 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 1115207 Query 79070 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTAT 79129 | |||| | ||||| | || || ||| ||| ||||||| | |||| |||| Sbjct 1115208 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 1115267 Query 79130 TTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAA 79189 |||| ||| || | ||| || || || ||||||||||||||||| | | ||||||| Sbjct 1115268 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 1115327 Query 79190 GACC-GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACA 79248 |||| || | | || ||| | || |||| ||||| ||||| ||||| | || Sbjct 1115328 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 1115386 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 ||||| | |||||||||||||||||| || ||| || ||| ||||| | | Sbjct 1115387 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 1115446 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 |||| || || | | || | | |||| ||||| ||| ||| | ||| Sbjct 1115447 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 1115506 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAG-AG 79427 || || |||| | || || || |||| ||| | | ||||| || || | |||| | Sbjct 1115507 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 1115565 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 1115566 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 1115625 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG-- 79545 | || || |||| ||||| ||||| | || |||| || | || | | Sbjct 1115626 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 1115685 Query 79546 ----ACTAT--TACT-TTGACCACATCCTTTAGTTTGAGAAAATCAA--ATCGTCCATCT 79596 ||| | || | ||| || | || | |||| | | ||| ||| || |||| Sbjct 1115686 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATCCTC-ATCT 1115743 Query 79597 -ATT--ACAAA--CATGTTCAACGCGACAGATG----CCAGATTACAAACGGCTACCTCA 79647 | | ||||| || | ||| ||| ||| ||| ||||| || | |||||| Sbjct 1115744 GACTCAACAAAGGCAGG--CAA----ACAAATGTTGGCCAAGTTACACACACCAACCTCA 1115797 Query 79648 TTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | | | | || | | | ||| ||| | ||| | | || ||||| || || Sbjct 1115798 TCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAG 1115857 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 || | |||||||||||| | ||||| |||||||| || | ||||| || ||||||||| Sbjct 1115858 TTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTT 1115917 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTA 79826 || |||||| || | |||| | ||| | | || ||||||| | | | ||| | Sbjct 1115918 TCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTT--CTTCTT 1115974 Query 79827 TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCG 79884 | | | |||| | ||||| | || || ||| ||||||||||| || ||||||| Sbjct 1115975 CCACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCT 1116034 Query 79885 TCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGT 79944 | || || || |||| | | ||| | ||||| | | || || || Sbjct 1116035 GAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGC 1116094 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 |||||||| | ||| ||||||||||||||| ||| | ||| | | | | |||||| Sbjct 1116095 TTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCT 1116154 Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||||| | | ||||| || | | ||||||| |||||| || |||||| Sbjct 1116155 TTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAG 1116214 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || || || || | || |||| ||||| || || ||||| | |||||||| || | Sbjct 1116215 TAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTG 1116274 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || | || | | ||| ||||| ||||| |||||||||||||| || |||| ||||| Sbjct 1116275 TTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATAC 1116334 Query 80185 CTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 ||| ||| |||||| || ||| ||| ||||| || || || || | ||||| || Sbjct 1116335 GAACCAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAAT 1116393 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 || || || |||| || ||||| ||||| || || || ||||| |||| || Sbjct 1116394 CAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAAC 1116453 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 || || || ||||| || | || ||| || ||||| || || || || || || Sbjct 1116454 TAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGC 1116513 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACG-TCTCAATAGCTGATTCTATATCCC 80422 || || || || | | |||| | | || | | ||| | || | ||||| Sbjct 1116514 ATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTA-GGAATATCAT 1116572 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 |||||| || || || || | ||| | | ||| || ||||||||| | | ||| Sbjct 1116573 CACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTAC 1116632 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 ||| ||| |||||| ||||| ||||||||| || |||||||| |||||||| | Sbjct 1116633 CATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGA 1116692 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 80602 |||| || |||||| |||| | ||||| | | |||||||| | |||| ||| Sbjct 1116693 AGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAAC--AATC-- 1116748 Query 80603 TGGTGATACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 80658 | | | || ||||| || ||||| | ||| | || ||||| |||||| Sbjct 1116749 TTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTG 1116808 Query 80659 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 80718 ||| |||||| || || ||| || | || || || | |||||| | |||||| | Sbjct 1116809 TATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATT 1116868 Query 80719 GCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTAT 80777 || | ||| ||||| ||| | ||||| |||||||| ||| || || || ||||| | Sbjct 1116869 GCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGT 1116927 Query 80778 TTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 80817 ||| || | || | ||||||| || | || || || ||| Sbjct 1116928 TTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 1116967 >seq23 Length=1344041 Score = 185 bits (204), Expect = 1e-41 Identities = 569/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 49690 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749 || || || |||||||| || || |||| || |||||||||||||| || || ||||| Sbjct 978472 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 978413 Query 49750 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACA-AATTC 49808 || || || |||| || | |||||||| | || ||| || || || ||| || || Sbjct 978412 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGC-ACAGAACTC 978354 Query 49809 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT 49868 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 978353 AACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCT 978294 Query 49869 A-AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCAC 49927 ||||| | || | |||| || || || || || || | | | | | || Sbjct 978293 CCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTAC 978235 Query 49928 TCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGT 49987 | ||||||||| || || |||| | ||||| |||||| || |||||||| | Sbjct 978234 TTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCAT 978175 Query 49988 CTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 50047 |||| | || || ||||| || ||||| || || ||||| | || | ||| || | || Sbjct 978174 CTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACC 978115 Query 50048 AAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAA 50107 | || ||||| ||||| || ||||| || || | ||||| | || ||||| ||||| | Sbjct 978114 AGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCA 978055 Query 50108 GTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCT 50164 |||||| |||| || |||| |||||| | |||||| ||||||| Sbjct 978054 ATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCT 977995 Query 50165 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 50224 || | | || || || | |||||||| || | |||| || || | || Sbjct 977994 CCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAG 977935 Query 50225 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 50284 | | ||| || ||||||||||| ||| | || || || ||||| |||| |||| Sbjct 977934 TGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCT 977875 Query 50285 GAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTG-TACAAAATCGTTC--A 50340 | || || ||||| ||| ||||| ||||| |||||| ||| | || || |||| Sbjct 977874 GGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGT 977819 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 || ||||| |||| || || || || || ||||| || ||||| ||| | || Sbjct 977818 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 977759 Query 50401 AAATGTTTTTCGTTGGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCT 50457 || | | | || |||| | | || |||||| || | | ||| || || | ||| Sbjct 977758 AAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 977699 Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 977698 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 977639 Query 50518 TATTGGATTGGGAAAATAACAAATCT 50543 || || || ||||| || || ||||| Sbjct 977638 TACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268548605920