Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq23 165 8e-36 >seq23 Length=1344041 Score = 165 bits (182), Expect = 8e-36 Identities = 584/902 (65%), Gaps = 19/902 (2%) Strand=Plus/Minus Query 13595 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13654 |||||| || |||||||| ||||| ||||| ||| || ||||||||||| || || || Sbjct 978479 AACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAA 978420 Query 13655 TGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 ||||||| | ||| | | || || || || || | | | | || || || || ||| Sbjct 978419 TGGATTTGT-GACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCAC 978361 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 ||||||| || |||| ||| | ||| | |||||||| | || || |||| Sbjct 978360 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAG 978301 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | | | || ||| || ||| |||||||| | || || | | ||||| Sbjct 978300 CGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGA 978241 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 | ||| || |||| || | || || | | || |||||||| ||| || | Sbjct 978240 CCTTACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGAC 978181 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| | ||||| ||||| || || || | ||||||||||| |||| || | Sbjct 978180 CCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCT 978121 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || || | ||||| || || || || || | || |||| |||||||| | Sbjct 978120 TCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAG 978061 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | |||| || || || | || | | || ||||||| | ||||||| || Sbjct 978060 CAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAG 978001 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG 14133 || | |||||| ||||| | || ||||| || || || || |||||| Sbjct 978000 CCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCT 977941 Query 14134 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT---CCA 14190 | | || || || || || | | | ||| | |||||||| ||||| | ||| Sbjct 977940 TGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCA 977881 Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250 || ||||| |||||||| ||| ||| || || | | || || | | ||| Sbjct 977880 TA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT 977824 Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14310 | | |||||||| |||| || |||||||| ||| ||||| || ||||| | Sbjct 977823 TCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAG 977764 Query 14311 TAATAAAGTATTGCTCTTCATTG---TTGAGTTT---TTTCCAATCGGATAAATCCTTAG 14364 || |||||| ||| |||||| || | || ||||| |||| |||||||| | Sbjct 977763 AGATGAAGTAT--CTC-TCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTG 977707 Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14424 | ||||| | || || | ||||| ||| || | || || || |||||| ||||| Sbjct 977706 AGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATA 977647 Query 14425 TTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGATGTT-TCTTTAAGAATTGGT 14483 | || | || ||||| || | || ||||| | |||||| || || || | ||| Sbjct 977646 TATCATCGTACTGAATAGGGAACATCACGAATCT-GTGGATGTTCTCCTTGAGCAATGGC 977588 Query 14484 TC 14485 || Sbjct 977587 TC 977586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727832095200