Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 297 3e-75 seq23 188 1e-42 >seq12 Length=1682134 Score = 297 bits (328), Expect = 3e-75 Identities = 757/1136 (67%), Gaps = 22/1136 (2%) Strand=Plus/Plus Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 |||||||| || || || | |||||||||||| | ||||| |||||||| || | || Sbjct 1115843 TTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATG 1115902 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTT 71894 || || ||||||||||| |||||| || | |||| | ||| | | || ||||||| Sbjct 1115903 AAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTT 1115961 Query 71895 TATTATA-TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | | | ||||| | || || || | ||||| | || || ||| |||||||||| Sbjct 1115962 CACTGTTCTTCTTCCACGTCCTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGT 1116020 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCA 72012 | || || ||| | || || ||| ||| | | ||||| ||||| || Sbjct 1116021 CACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGT 1116080 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 | || | || || |||||||| | ||| ||||||||||||||| ||| | ||| | Sbjct 1116081 TGCTC-TCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGT 1116139 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | | | |||||| || || ||||||| | | ||||| || | | ||||||| | Sbjct 1116140 GCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCA 1116199 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || |||||||| || || || | || || | ||||| || || ||||| | Sbjct 1116200 TGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACA 1116259 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 |||||||| || | || | || | | ||| ||||| ||||| ||||||| |||||| Sbjct 1116260 TATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTA 1116319 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT-TGATAGACCTATTCCCCC 72311 || |||| ||||| ||| ||| |||||| ||| ||| ||| ||||| || || || Sbjct 1116320 GTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACC 1116378 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 || | ||||| || || || || |||| || ||||| ||||| || || ||| || Sbjct 1116379 AGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTC 1116438 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 ||| |||| || || || || ||||| || | || ||| || ||||| || Sbjct 1116439 ATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAA 1116498 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG-TCTCAATAG 72490 || || || || || || || || || | | |||| | | || | | ||| | Sbjct 1116499 CAACGTTGGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACAC 1116558 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 || | ||||| ||| || || || || || | ||| | | || || |||| Sbjct 1116559 CTTA-GGAATATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTC 1116617 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 ||||| | | ||| ||| ||| |||||| || || ||||||||| || ||||||| Sbjct 1116618 TTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAA 1116677 Query 72611 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATT 72670 | |||||||| ||||| || |||||| |||| | || || | | |||||||| | Sbjct 1116678 AGTAGTTGTAACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCT 1116737 Query 72671 TGTTAAC-----TATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 72725 |||| |||| | | | | ||||| || ||||| | ||| | || Sbjct 1116738 CCATAACAATCTTATAAACCTCATCA-----GAAATCATAGGAGACTTCTTCTGGGTCTT 1116792 Query 72726 AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 72785 ||||| |||||| ||| |||||| || || ||| || | || || || | ||| Sbjct 1116793 TGGATTGTAGTAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTT 1116852 Query 72786 GTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGT 72845 ||| | |||||| | || | ||| ||||| | | | ||||| |||||||| ||| || Sbjct 1116853 GTGCAAATTTGAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT 1116912 Query 72846 ACAAGT-GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 72900 || || ||||| |||| || | || | ||||||| || | || || || ||| Sbjct 1116913 -CATGTATGCTGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 1116967 Score = 114 bits (126), Expect = 2e-20 Identities = 330/499 (66%), Gaps = 9/499 (2%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||||| |||||||| |||||||| | || |||| || ||||| ||||| Sbjct 1114883 GTACGTAAGTAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAA 1114942 Query 70891 GTTAGTTTGGA-ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || | ||| |||| | | | || | || || ||||| || ||| || ||| Sbjct 1114943 GTCAATTTACCCATAGTTGGTGACTGCAAA-TGGATGTTCATAGATTGAGACTGGCAGAT 1115001 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 | | || ||||| || |||||||| | |||| | ||| || | ||| ||||||| || Sbjct 1115002 GTATGCGCCCCTATCAGCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTGT 1115061 Query 71010 TTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCAT 71065 | || |||| ||| || | || |||| ||||| |||||||| || || | Sbjct 1115062 CCTGTACAACTT-CTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGT 1115120 Query 71066 CTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAA 71125 | ||| || || || || | || ||||||| | | || | | | |||| | Sbjct 1115121 CGTGAATGATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCA 1115180 Query 71126 GGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 71185 | | ||||||||| | || ||||| |||| | ||||| | || || ||| Sbjct 1115181 ACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAG 1115240 Query 71186 TGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCA 71245 ||| | ||||| | | || |||| |||| ||| || | ||| || |||||||||| Sbjct 1115241 AGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCA 1115300 Query 71246 TAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAGAGAT 71304 ||||||||||||| ||| |||||||||||| || | | || ||| | || |||| Sbjct 1115301 TAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-GTCTTGGCAATCTTAGCCTTCAGAGTA 1115359 Query 71305 TCCCAATTCCAAAGATCCG 71323 ||||| | ||| ||||||| Sbjct 1115360 TCCCAGTCCCACAGATCCG 1115378 >seq23 Length=1344041 Score = 188 bits (208), Expect = 1e-42 Identities = 571/867 (66%), Gaps = 20/867 (2%) Strand=Plus/Minus Query 41795 TTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 41854 || || || ||||||||||| || |||| || |||||||||||||| || || ||||| Sbjct 978472 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 978413 Query 41855 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCT 41914 || || || |||| || | |||||||| | || ||| || || || ||| || Sbjct 978412 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 978353 Query 41915 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA 41974 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 978352 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 978293 Query 41975 -AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCAC 42032 ||||| | || | ||||| || || || || || || |||| | | | | || Sbjct 978292 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTC-TCTTGATAATGACCTTAC 978235 Query 42033 TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCAT 42092 | ||||||| | || || |||| | ||||| |||||| || |||||||||| Sbjct 978234 TTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCAT 978175 Query 42093 CTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 42152 |||| | || | ||||| || ||||| || || ||||| | || | ||| || | || Sbjct 978174 CTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACC 978115 Query 42153 AAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAA 42212 | || || || ||||| |||||||| || || | ||||| | || ||||| |||| | Sbjct 978114 AGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCA 978055 Query 42213 GTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCT 42269 |||||| |||| ||| ||| | |||||| | |||||| ||||||| Sbjct 978054 ATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCT 977995 Query 42270 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 42329 || | | || || || | |||||||| || | |||| || || | || Sbjct 977994 CCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAG 977935 Query 42330 TAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCT 42389 | | ||| || ||||||||||| ||| | || || || ||||| |||| |||| Sbjct 977934 TGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCT 977875 Query 42390 GAAATCCGTAGAAACATCTGGCCTC-GGTAACCTGTACTTCTG-TACAAAATCGTTC--A 42445 | || || ||||| ||| ||||| ||||| ||| || ||| | || || |||| Sbjct 977874 GGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGT 977819 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 || ||||| || | || || || || || ||||| || ||||| ||| | || Sbjct 977818 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 977759 Query 42506 AAATATTTTTCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTTTAGATATATC 42561 || ||| | || | || || || | |||||| || | | ||| || || | ||| Sbjct 977758 AAGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATC 977700 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 | || || | ||||| || || || || ||||| || ||||| | ||| ||||||| Sbjct 977699 GATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATC 977640 Query 42622 ATATTGAATTGGGAAAATAACAAATCT 42648 || ||||| ||||| || || ||||| Sbjct 977639 GTACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138965101280