Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq23 132 4e-26 >seq23 Length=1344041 Score = 132 bits (146), Expect = 4e-26 Identities = 573/890 (64%), Gaps = 21/890 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || || ||| |||||| || ||||| || || || || || | || || |||||| Sbjct 978493 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 978434 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976 ||||| || ||||| |||||| | || | ||| || | || || ||| | | Sbjct 978433 TCCATGAAGTCGAATGGATTTGTG--ACGTT-GTAAACCTTCTCGCATCCCAATGCGATA 978377 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||| ||||| ||| ||||| | |||||| ||| | ||| ||||||| || | | Sbjct 978376 AGCAACCTGTCGGCACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGT 978317 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || || || | ||| ||| | | || |||| || |||| ||| || ||| | | Sbjct 978316 AAAGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATG 978257 Query 13097 ATGTCTCTT-ATTACGTTCTCTAATGGAGGAT--TTGATAGATGCTTAAACATCATACAT 13153 || |||||| || | | || ||| |||| || | || || |||| | ||| Sbjct 978256 AT-TCTCTTGATAATGACCTTACTTGGTGGATGCTTCA-AG-TGAGAGAACAAAAGGCAT 978200 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 |||||||| || | || |||||||| | || |||||||| || || || || || Sbjct 978199 GCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCT 978140 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | |||| || || | ||| || || | |||||||| || || ||||| | Sbjct 978139 GGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACA 978080 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||| || ||||| || | ||| || ||| ||||| | || | | | | |||| Sbjct 978079 CCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATC 978020 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT--ATTGCGTTAA 13391 || | ||||| || || | |||| || | ||| | | || || || | Sbjct 978019 CATCTCAAAGCCCATAAAGCCTTCTCCTTAA--TAGGTGGAATTGTATGGATGGCATTGA 977962 Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 | || || | || || |||| ||||| || || ||||| | | ||| | | Sbjct 977961 ACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCT 977902 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | || || || || || | | || ||||||||||| || ||| ||||| | || || Sbjct 977901 CAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACT 977842 Query 13512 G-AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 | | || | |||| | | | ||| || || || | || || || || ||| ||| Sbjct 977841 GCACCTGCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCA 977783 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT-TAA--CCAA 13627 || || || | | | || || | | | || || | || ||| | | ||| Sbjct 977782 AAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAG 977723 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 || | ||||| ||||| | ||| | |||||| | ||||| ||||| || | |||||| Sbjct 977722 TCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 977663 Query 13688 TTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCT 13737 || ||||| ||||||||| | || ||| || |||| ||| |||| Sbjct 977662 TTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982252927256