Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10-
07] 28 sequences; 12,502,959 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 3e-32
seq23 134 3e-26
seq12 114 3e-20
>seq1
Length=1824870
Score = 154 bits (170), Expect = 3e-32
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| |||||||| || |||||||| | ||||||||| || || | || || |||
Sbjct 738122 GTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAACTGCTTACCA 738063
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 738062 GCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGATCTTTTGCTTG 738003
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||||| || || ||||| | || ||||||||||| || | ||
Sbjct 738002 ACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTC 737943
Query 104543 TTTACAAATATCTGCATTTT 104562
|| || || || ||||||||
Sbjct 737942 TTAACGAAAATTTGCATTTT 737923
>seq23
Length=1344041
Score = 134 bits (148), Expect = 3e-26
Identities = 383/582 (66%), Gaps = 20/582 (3%)
Strand=Plus/Plus
Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759
||||| ||||| || || || ||| | | |||||||||| |||||||| ||||||
Sbjct 977613 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 977672
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---- 268815
|| ||||| ||||||| || || | ||||| || | || || | || |||||
Sbjct 977673 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 977732
Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875
|| | || ||| | || ||| || || ||| | | | || || ||||| | |
Sbjct 977733 AAGATGAATGCCA-ATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTC 977791
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG-AGGTACAGATTCCTG 268934
|||||||| || | || ||| | | | |||| || | | ||| |||| ||| | ||||
Sbjct 977792 AGATGGTATTGTCGATGAGAATTTGGCACAGAACTT-TATGAAGCAGGTGCAGTTACCTG 977850
Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994
| || ||| || || || |||||||| | || || || || || |||| ||
Sbjct 977851 AGGCAAGAGCCTTCTATGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACTTATT 977910
Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTA 269054
|| || || || || ||||| ||| || || || ||||| || ||| |
Sbjct 977911 CCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAGTCC----GACTACTTG-TTCAA 977965
Query 269055 TGAGAACTATGGACTG-----TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109
|| | | || | | | | | | || || ||||||| ||| |||||||||
Sbjct 977966 TGCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAA 978025
Query 269110 CGATAGCGCGCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166
| || | ||| | | || || || ||||||||||| || | |||||| | ||
Sbjct 978026 CAATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTT 978085
Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226
|| || || || |||||| | ||||| ||||||||||| ||||| | |||||||| |
Sbjct 978086 TTTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCT 978145
Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268
|| ||||||||||| | || |||| || || ||| ||||
Sbjct 978146 TACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACA 978187
>seq12
Length=1682134
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || ||||| || | |||||| || || || | || || |||
Sbjct 1445829 GTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATCCTCCAACTGCTTACCA 1445888
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | ||||| ||||| || || ||||| || || || || |||||| ||
Sbjct 1445889 GCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTTTGCTTG 1445948
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| || || ||||| | || ||||||||||| || | ||
Sbjct 1445949 ACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTCAAAGTC 1446008
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || || |||||||||
Sbjct 1446009 TTAACGAAAATTTGCATTTTG 1446029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397986935824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |