Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq23 134 3e-26 seq12 114 3e-20 >seq1 Length=1824870 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| |||||||| || |||||||| | ||||||||| || || | || || ||| Sbjct 738122 GTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAACTGCTTACCA 738063 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||||||||||| || ||||| || |||||||| |||||| || Sbjct 738062 GCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGATCTTTTGCTTG 738003 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| || || ||||| | || ||||||||||| || | || Sbjct 738002 ACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTC 737943 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || |||||||| Sbjct 737942 TTAACGAAAATTTGCATTTT 737923 >seq23 Length=1344041 Score = 134 bits (148), Expect = 3e-26 Identities = 383/582 (66%), Gaps = 20/582 (3%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| ||||| || || || ||| | | |||||||||| |||||||| |||||| Sbjct 977613 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 977672 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---- 268815 || ||||| ||||||| || || | ||||| || | || || | || ||||| Sbjct 977673 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 977732 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 || | || ||| | || ||| || || ||| | | | || || ||||| | | Sbjct 977733 AAGATGAATGCCA-ATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTC 977791 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG-AGGTACAGATTCCTG 268934 |||||||| || | || ||| | | | |||| || | | ||| |||| ||| | |||| Sbjct 977792 AGATGGTATTGTCGATGAGAATTTGGCACAGAACTT-TATGAAGCAGGTGCAGTTACCTG 977850 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 | || ||| || || || |||||||| | || || || || || |||| || Sbjct 977851 AGGCAAGAGCCTTCTATGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACTTATT 977910 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTA 269054 || || || || || ||||| ||| || || || ||||| || ||| | Sbjct 977911 CCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAGTCC----GACTACTTG-TTCAA 977965 Query 269055 TGAGAACTATGGACTG-----TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 || | | || | | | | | | || || ||||||| ||| ||||||||| Sbjct 977966 TGCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAA 978025 Query 269110 CGATAGCGCGCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 | || | ||| | | || || || ||||||||||| || | |||||| | || Sbjct 978026 CAATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTT 978085 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || |||||| | ||||| ||||||||||| ||||| | |||||||| | Sbjct 978086 TTTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCT 978145 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || ||||||||||| | || |||| || || ||| |||| Sbjct 978146 TACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACA 978187 >seq12 Length=1682134 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || | |||||| || || || | || || ||| Sbjct 1445829 GTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATCCTCCAACTGCTTACCA 1445888 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||| || || || || |||||| || Sbjct 1445889 GCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTTTGCTTG 1445948 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || || ||||| | || ||||||||||| || | || Sbjct 1445949 ACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTCAAAGTC 1446008 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || || ||||||||| Sbjct 1446009 TTAACGAAAATTTGCATTTTG 1446029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397986935824