Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12 347 2e-90 seq23 185 1e-41 >seq12 Length=1682134 Score = 347 bits (384), Expect = 2e-90 Identities = 1375/2135 (64%), Gaps = 55/2135 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 62051 |||||||| |||| |||||| || || ||||||| |||||||| || ||||| Sbjct 1114853 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTTTTC 1114909 Query 62052 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 62110 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 1114910 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 1114969 Query 62111 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 62170 | |||||| |||||||||||| || |||| | || ||||| || |||||||| | Sbjct 1114970 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATATC 1115028 Query 62171 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 62229 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 1115029 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 1115087 Query 62230 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 62286 ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 1115088 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 1115147 Query 62287 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 62346 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 1115148 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 1115207 Query 62347 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62406 | |||| | ||||| | || || ||| ||| | ||||| | | || |||| Sbjct 1115208 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 1115267 Query 62407 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62466 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 1115268 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 1115327 Query 62467 GACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA 62525 |||| || | | || ||| | || |||| ||||| | ||| ||||||| || Sbjct 1115328 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 1115386 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 |||||||||||| || || || ||| ||||||| | Sbjct 1115387 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 1115446 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || | || || | | |||| || | |||| |||||| ||| ||| | ||| Sbjct 1115447 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 1115506 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AG 62704 || || |||| | || || || |||| || | | ||||| || || | |||| | Sbjct 1115507 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 1115565 Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 1115566 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 1115625 Query 62765 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-- 62822 | | || || |||| ||||| ||||| | || |||| || | || | | Sbjct 1115626 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 1115685 Query 62823 -ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCCCATCT 62873 |||| ||| | ||| || | || | |||| | | ||| ||| | ||||| Sbjct 1115686 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATC-CTCATCT 1115743 Query 62874 ATTACAAACATGTTCAAGGCAACAGATG----CCAGATTACAAACGGCTACCTCATTAGC 62929 ||| | | || | |||| ||| ||| ||||| || | ||||||| | Sbjct 1115744 GACTCAACAAAGG-CAGGCAAACAAATGTTGGCCAAGTTACACACACCAACCTCATCTGG 1115802 Query 62930 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 62989 | | || | | | |||| ||| | || | | ||||| || || || || | Sbjct 1115803 AGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTT 1115862 Query 62990 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63049 |||||||||||| | ||||| |||||||| || | ||||| || ||||||||||| | Sbjct 1115863 CTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGT 1115922 Query 63050 CTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGAT-TTGTATCTC 63107 ||||| || | |||| | ||| | | || ||||||| | | | | || | || Sbjct 1115923 CTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCTTCTTCCACGTC 1115981 Query 63108 CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 ||| || | ||||| | || |||||| ||||||||||| || |||||| | Sbjct 1115982 CTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGA 1116040 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || ||| ||| | | ||| | ||||| ||| || ||| || |||||| Sbjct 1116041 CCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATA 1116100 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || | ||| ||||||||||||||| ||| | ||| | | | | ||||| || || Sbjct 1116101 AATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTACCA 1116160 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||||| | | ||||| || | | ||||||| |||||| || |||||||| || Sbjct 1116161 TGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATA 1116220 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || || | || || | ||||| || || ||||| | |||||||| || | || | Sbjct 1116221 GCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGAAC 1116280 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||| |||||||| ||| ||||||| ||||||| ||||| ||| Sbjct 1116281 ACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCA 1116340 Query 63468 CTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 ||| |||||| || ||| ||| ||||| || || || || | ||||| || || || Sbjct 1116341 GTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAATCAAAGC 1116399 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 || |||| || || || |||||||| || || ||||| |||| || || || Sbjct 1116400 ACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAA 1116459 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 || ||||| || | || ||| || ||||| || || || || || || || || Sbjct 1116460 GCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGT 1116519 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATATCCCATTGAT 63705 || || | | || | | | || | | ||| | || || ||||| || Sbjct 1116520 GAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAATATCATCACCAT 1116578 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 |||| || || || || | ||| | | ||| || ||||||||| | | ||| || | Sbjct 1116579 GAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATTAA 1116638 Query 63766 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 || |||||| || || ||||||||| || |||||||| |||||||| ||||| | Sbjct 1116639 TTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGAAGTCAC 1116698 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC-----TATATCCAT 63880 | |||||| |||| | ||||| | | |||||||| | |||| |||| | | Sbjct 1116699 GGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAACAATCTTATAAACCT 1116758 Query 63881 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63940 | | ||||| || ||||| | ||| | || ||||| |||||| ||| Sbjct 1116759 CATCA-----GAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTGTATAG 1116813 Query 63941 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 64000 |||||| || || ||| || | || || || | |||||| | |||||| | || | Sbjct 1116814 ATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATTGCAAG 1116873 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 64059 ||| ||||| | | | ||||| || ||||| ||| || || || ||||| |||| | Sbjct 1116874 TCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGTTTCAG 1116932 Query 64060 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 64094 | | || | ||||||| || | || || || ||| Sbjct 1116933 CAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 1116967 >seq23 Length=1344041 Score = 185 bits (204), Expect = 1e-41 Identities = 568/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 33034 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33093 || || || |||||||| || || |||| || |||||||||||||| || || ||||| Sbjct 978472 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 978413 Query 33094 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCT 33153 || || || |||| || | |||||||| | || ||| || || || ||| || Sbjct 978412 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 978353 Query 33154 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA 33213 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 978352 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 978293 Query 33214 -AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACT 33272 ||||| | || | |||| || || || || || || | | | | | ||| Sbjct 978292 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTACT 978234 Query 33273 CGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTC 33332 ||||||||| || || |||| | ||||| |||||| || |||||||| || Sbjct 978233 TGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATC 978174 Query 33333 TCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33392 ||| | || || ||||| || ||||| || || ||||| | || | ||| || | ||| Sbjct 978173 TCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCA 978114 Query 33393 AAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || ||||| || || |||||||| || || | ||||| | |||||||| |||| | Sbjct 978113 GAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAA 978054 Query 33453 TCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||| |||| || |||| |||||| | |||||| ||||||| Sbjct 978053 TCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCTC 977994 Query 33510 TTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33569 || | | || || || | |||||||| || | |||| || || | || | Sbjct 977993 CTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAGT 977934 Query 33570 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33629 | ||| || ||||||||||| ||| | || || || ||||| |||| ||||| Sbjct 977933 GATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTG 977874 Query 33630 AAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCTG-TACAAAATCGTTC--CG 33685 || || ||||| ||| ||||| ||||| ||| || ||| | || || |||| | Sbjct 977873 GAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGTG 977818 Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||| |||| || || || || || ||||| || ||||| ||| | || | Sbjct 977817 CCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATGA 977758 Query 33746 AATATTTTTCGTCTGGTGTTAGT----TTATTCCAATCATTGATATCTTTAGATATATCT 33801 | ||| | || | ||| || | | |||||| || | | ||| || || | ||| Sbjct 977757 AGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 977699 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 977698 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 977639 Query 33862 TATTGGATTGGGAAAATAACAAATCT 33887 || || || ||||| || || ||||| Sbjct 977638 TACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946981968480