Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 149 2e-30 seq22 104 6e-17 seq23 93.3 1e-13 >seq12 Length=1682134 Score = 149 bits (164), Expect = 2e-30 Identities = 300/440 (68%), Gaps = 4/440 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | ||||| ||| ||||||||| |||| || |||||||| || Sbjct 1116522 TTCACACATGCATCACCAACGTTGTTCAATGCTGGTACTCCACGCCCTCAGATGTCATCA 1116463 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | |||||| || || || || || ||||||| || || | || | Sbjct 1116462 TGCTTCTTAGTTGCAATGAAAGATGACTCTATTGAAGGTATCTACGATACTTTGAAACAG 1116403 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | ||||| |||| ||| || || |||||| | || ||||| ||||| | Sbjct 1116402 TGTGCTTTGATTTCTAAGACTGCTGGTGGTATTGGTCTTCACATTCACAACATTCGTTCC 1116343 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 || | || | ||| ||| || || ||| || || || | |||| ||| ||| Sbjct 1116342 ACTGGTTCGT-ATATTGCCGGTACTAATGG-TACATCCAACGGTATAATTCCGATGGTTC 1116285 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 ||||||| ||| |||||| || || || || || ||||| ||| | ||| || Sbjct 1116284 GTGTGTTCAACAGTACTGCTAGATATGTGGATCAAGGTGGTAACAAGAGACCAGGTGCCA 1116225 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 ||||||| || | |||||| ||||| ||||| || || ||| | || || | || | Sbjct 1116224 TTGCTATTTACTTGGAGCCTTGGCATGCTGATATCTTCGACTTTATCGATATCAGAAAGA 1116165 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 | || |||||||| | |||||||||||| |||| || |||||| || | || Sbjct 1116164 ATCATGGTAAAGAGGAGATTCGTGCACGTGATTTGTTTCCAGCTCTTTGGATTCCAGATT 1116105 Query 363965 ATTTTATGAAGCGCGTGGAG 363984 ||||||||||| |||||| Sbjct 1116104 TATTTATGAAGCGTGTGGAG 1116085 >seq22 Length=1510904 Score = 104 bits (114), Expect = 6e-17 Identities = 343/530 (65%), Gaps = 14/530 (3%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||||||||| | |||||| ||| || || | |||||| |||||||||||| ||| Sbjct 295056 GTTCCCATGCTCAGGGTGTTTAACAGCACAGCAAAGTACGTTGACCAGGGTGGAAACAAG 295115 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || | | |||||| ||||| ||||| |||||| | || || || Sbjct 295116 CGTCCTGGTGCAATATGTGCGTATCTTGAGCCCTGGCATGCGGATATTCTGGAATTCCTC 295175 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || ||| ||| ||| || || |||||| |||| ||| | ||||| || ||||| | Sbjct 295176 GACCTCAAGAAGAACCACGGCAAGGAGGAAATGCGGGCAAGGGATCTCTTTTATGCGTTG 295235 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTG--GTCACTCTTTT 364009 ||| || | |||| || |||| ||| ||| || | | ||| || ||| || || | Sbjct 295236 TGGATTCCGGACCTGTTCATGAGGCGTGTGAAGAACGATGAGATGTGGAGTCTCTTTTCT 295295 Query 364010 GCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACG 364069 | | || | ||||| || || || ||||||| ||| | || | || ||| Sbjct 295296 GAGGATAC--AGCACCAGGACTATCAGACAAATGGGGTCCCGAGTTTGAATCCCTGTACA 295353 Query 364070 AAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT-----CCCGCACAGAAGCTATG 364124 | |||| ||| || || | || || | || || ||||| ||| | || Sbjct 295354 CACAGTACGAAAAAGAAGGCCGGTATC-TACGGCAGTTGAAGGCCCGC----AAGGTGTG 295408 Query 364125 GTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTC 364184 | || | |||| |||| ||||||||||| || | | | || || ||||| Sbjct 295409 GGAGAGGATTCTTTATTCTCAGACCGAGACAGGAACGCCTTTCCTCCTTTATAAGGATTC 295468 Query 364185 GTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTAC 364244 |||||| ||||| || ||| || ||||||| || || || | ||| || || Sbjct 295469 GTGCAATGCGAAGTCGAATCAGAAGAACCTTGGAACCATCAAGTCGTCCAATCTCTGCTG 295528 Query 364245 CGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTG 364294 ||| || | || ||| | | ||||||| ||||| || ||||||| Sbjct 295529 CGAAGTTGTCGAGTACTCATCCAAGGACGAGATCGCCGTGTGCAACCTTG 295578 Score = 95.1 bits (104), Expect = 3e-14 Identities = 197/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 ||||| ||||||||||| | |||||| | ||| || ||| ||||||||||| | ||| Sbjct 296064 ATGCCGACGGCTTCTACATCGCAGATCTTGGGATTCACCGAATGCTTCGAACCAATCACA 296123 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875 |||| | || | | | || |||||||| || | ||| || || |||||| Sbjct 296124 TCCAATATCTACACCAGGAGAGTCCTTTCCGGTGAGCACCAGGTGGTAAACTCGTACCTC 296183 Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935 || | |||||| | | ||||| ||| | | |||||| || | || || ||| Sbjct 296184 ATCGACGATCTTGACAAGTTGGGGCTCTGGAACTCCGGAATGAAGGACCAGATTATTGCC 296243 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995 || ||||| || | ||| | ||| |||| | || ||| | | |||| |||||||| Sbjct 296244 GCCAATGGATCCATCCAGGATATTGCAGGCATCCCGGAAAACATCAAGCAGCTTTACAAA 296303 Query 364996 ACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCG 365045 || || ||||| || || || || | |||| |||||||| || || || Sbjct 296304 ACAGTCTGGGACATGTCTCAAAAGATC-ATCATCGATATGGCAGCGGACCG 296353 >seq23 Length=1344041 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 || |||| | | |||||| | ||||| ||||| ||| |||||| |||||||| | Sbjct 977976 ACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAACAATGATGAT 978035 Query 22480 TCATTC---GCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 | || || || | | |||| ||||||| ||||||| | || || |||||| Sbjct 978036 GCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTTTTCTCTGGA 978095 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 | ||| | ||||| ||| | || || | | | ||||| || || ||||| || Sbjct 978096 TCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTTACGTTCTCT 978155 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||| | || || ||||||||||||| |||||||||||||| || Sbjct 978156 AACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATG 978202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353132421896