Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11 131 1e-25 seq1 118 7e-22 seq12 105 4e-18 >seq11 Length=7828 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 7515 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 7456 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 7455 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 7421 Score = 107 bits (118), Expect = 1e-18 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 19943 ATTTCTCTCTCTT--CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGG 20000 ||||| ||||||| |||||||||||||| |||||| |||| ||||||||| |||||||| Sbjct 5487 ATTTCACTCTCTTTCCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTTGCTATCGG 5428 Query 20001 TCTCGCGGTAATATTTAGCCTTA 20023 |||| || ||||||||||||||| Sbjct 5427 TCTCTCGCTAATATTTAGCCTTA 5405 >seq1 Length=1824870 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | ||| ||||| |||||||| ||||| ||||| ||||| |||| Sbjct 738154 TACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAG 738095 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | || || || || || || ||||| || | | |||||||| | | Sbjct 738094 ACAAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTG 738035 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| || |||||||| ||||| | | ||||| | || | Sbjct 738034 GAATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCA 737975 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || || || ||||| |||||||||||||| || ||||| || ||||| ||| Sbjct 737974 CCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTT 737922 >seq12 Length=1682134 Score = 105 bits (116), Expect = 4e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||||||||| | ||| ||||| |||||||| |||||| || || ||||| || Sbjct 1445796 TTACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCC 1445855 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||||| | | || || || || || || ||||| || | | || ||||| | Sbjct 1445856 GACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGT 1445915 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || || ||||| || |||||||| ||||| | | || || | || Sbjct 1445916 GGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCC 1445975 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || ||||| ||||| ||||| || || ||||| || ||||| || Sbjct 1445976 ACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1446028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947085699268