Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10-
07] 28 sequences; 12,502,959 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 138 3e-27
seq1 132 1e-25
>seq12
Length=1682134
Score = 138 bits (152), Expect = 3e-27
Identities = 164/222 (74%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||| | ||| ||||| |||||||| |||| ||||||||| | |||||| || ||
Sbjct 1445810 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1445869
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| |||||| || || ||||| | | |||||| || || ||||| ||
Sbjct 1445870 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1445929
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| || ||||||||||| || || | |||||| | | || || ||||| |||||
Sbjct 1445930 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1445989
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|||||||| || | ||| || || |||||||| ||||||
Sbjct 1445990 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTG---CATTTT 1446028
Score = 95.1 bits (104), Expect = 3e-14
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||| || || ||||||||||| ||||| || |||||| | || |||||| |||||||
Sbjct 1445896 ATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTACAACATCCAGAAG 1445837
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024
||||||||||||||| | || ||||||
Sbjct 1445836 GAGTCTACTCTTCACTTGGTCTTGAGA 1445810
>seq1
Length=1824870
Score = 132 bits (146), Expect = 1e-25
Identities = 163/222 (73%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||| | ||| ||||| || ||||| || | ||||||||||| |||||| || ||
Sbjct 738141 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 738082
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| |||||| || || ||||| | | ||| || || || |||||| ||
Sbjct 738081 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 738022
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||| ||||||||||| || || | ||| || | | || || ||||| |||||
Sbjct 738021 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 737962
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
||||||||||| | || || || |||||||| ||||||
Sbjct 737961 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTG---CATTTT 737923
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||| || || ||||||||||| ||||| || |||||| | || |||||| | |||||
Sbjct 738055 ATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAACATTCAGAAG 738114
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024
|| |||||||||||| | || ||||||
Sbjct 738115 GAATCTACTCTTCACTTGGTCTTGAGA 738141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921177061876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |