Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 138 3e-27 seq1 132 1e-25 >seq12 Length=1682134 Score = 138 bits (152), Expect = 3e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| ||||| |||||||| |||| ||||||||| | |||||| || || Sbjct 1445810 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1445869 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| || || ||||| | | |||||| || || ||||| || Sbjct 1445870 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1445929 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||||||||| || || | |||||| | | || || ||||| ||||| Sbjct 1445930 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1445989 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||||| || | ||| || || |||||||| |||||| Sbjct 1445990 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTG---CATTTT 1446028 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||| ||||| || |||||| | || |||||| ||||||| Sbjct 1445896 ATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTACAACATCCAGAAG 1445837 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 ||||||||||||||| | || |||||| Sbjct 1445836 GAGTCTACTCTTCACTTGGTCTTGAGA 1445810 >seq1 Length=1824870 Score = 132 bits (146), Expect = 1e-25 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| ||||| || ||||| || | ||||||||||| |||||| || || Sbjct 738141 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 738082 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| || || ||||| | | ||| || || || |||||| || Sbjct 738081 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 738022 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||||||||| || || | ||| || | | || || ||||| ||||| Sbjct 738021 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 737962 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||||||||| | || || || |||||||| |||||| Sbjct 737961 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTG---CATTTT 737923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||| ||||| || |||||| | || |||||| | ||||| Sbjct 738055 ATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAACATTCAGAAG 738114 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 || |||||||||||| | || |||||| Sbjct 738115 GAATCTACTCTTCACTTGGTCTTGAGA 738141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921177061876