Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 205 4e-47 seq25 143 1e-28 seq12 131 7e-25 seq23 87.8 7e-12 seq3 87.8 7e-12 >seq1 Length=1824870 Score = 205 bits (226), Expect = 4e-47 Identities = 857/1328 (65%), Gaps = 56/1328 (4%) Strand=Plus/Plus Query 451191 AAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAG 451250 |||| ||||| | ||||| || | || || ||||| || || || | || || | Sbjct 1567396 AAGGTAAGCCAAAGATTCAGGTTGAATACAAGGGTGAGACAAAGGTCTTCACACCAGAGG 1567455 Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 | || |||||||||||| | || ||||||| | || || || || | || Sbjct 1567456 AGATCTCATCTATGGTTTTGACAAAAATGAGAACCACCGCCGAGGCTTACTTGGGAGAGA 1567515 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 || | ||||| || |||| ||||| ||||| ||||||||| | || | || |||| Sbjct 1567516 AGGTGAAGGATGCTGTGGTTACAGTTCCAGCTTACTTCAATGATTCCCAGAGACAGGCAA 1567575 Query 451371 CTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429 | ||||||||||| ||| |||||||| | ||||| | |||| || ||||| ||||| Sbjct 1567576 CCAAAGATGCAGGTACA-ATTGCTGGCATGAATGTGATGAGAATCATCAATGAGCCTACT 1567634 Query 451430 GCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA 451489 ||||| ||| | || ||||| | ||| || | || | || || ||| | || Sbjct 1567635 GCAGCAGCTATTGCTTATGGTTTGAACAAAGAGAAGGGAAGTGGCGAGAAGAATGTCTTG 1567694 Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 | || ||||| ||||| || || |||| ||| | | || ||||| || || | Sbjct 1567695 ATTTTCGATTTGGGTGGTGGTACCTTTGATGTTTCCCTTTTGTCTATTGATGAGGGTATC 1567754 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 ||||| || ||||| || ||||||||||| | || ||||| || ||||||| || Sbjct 1567755 TTTGAGGTTAAGGCCACTGCCGGTGATACTCACTTGGGTGGTGAGGACTTTGATAA--CA 1567812 Query 451610 -ATTGTGGAAT--GGTTGAAAACTGATGTTCAA-CGAAA--ACTAAAAGTAGATATTTCT 451663 |||| | | ||| ||| || |||||| |||| || | ||| ||||| || Sbjct 1567813 GATTGGTTACTCACTTTGCCAAC-GA-GTTCAAGAGAAAGTACCATAAG--GATATGACT 1567868 Query 451664 ACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTC 451723 ||| || | ||| | ||| | | | ||| || |||| |||||| | ||| | Sbjct 1567869 GGTAATCAGAGAGCTTTGAGAAGATTGAGAACTGCATGTGAAAGAGCTAAGAGAACATTG 1567928 Query 451724 AGTTCA---ACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGA-TTA 451779 |||| |||| || || | | | || || ||| |||| || || || || Sbjct 1567929 TCTTCATCTGCACAGAC--CT-CTGTTGAGATCGACTCTTTGTTTGAGGGTATCGACTTC 1567985 Query 451780 TGCTACTACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGT 451839 | | || | |||| | || | |||||| |||| | ||| || | | || | Sbjct 1567986 TAC-ACATCAATTACGAGGGCAAGATTTGAGGAGCTTTGCT-CAG-ATCTGTTCAGATCT 1568042 Query 451840 A--ATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGAT 451897 | || | ||||| || | || || |||||||| || || | || ||||| Sbjct 1568043 ACTCTGGACCCTGTCGAAAAGGTTTTGAGGGATTCTAAGCTTGACAAGGCAAAGATTGAC 1568102 Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957 || ||||||||||| || ||||||||| ||||||| || |||| | || | ||| Sbjct 1568103 GAGATTGTGCTTGTTGGTGGTTCTACAAGAATTCCAAAGGTTCAGAAATTGGTTTCTGAC 1568162 Query 451958 TATTTT--------GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTG 452009 || ||| |||| ||||| || || | || |||||||||||||||| Sbjct 1568163 TACTTTAACGGTAAGGAGCCTAACAA--ATCTA------TCAACCCTGATGAAGCTGTTG 1568214 Query 452010 CATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGAT-----GAAAAATT 452064 | ||||||||||||||||| ||||||||| | || ||| || ||| ||| | | Sbjct 1568215 CCTATGGTGCTGCAGTTCAGGCAGCTATTTTGACTGGT---GACGATTCCTCGAAGACTC 1568271 Query 452065 AGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGG 452124 |||| | | || | | ||||| |||||| ||||| | || | || || |||||||| Sbjct 1568272 AGGACTTGT--TGCTTTTGGATGTTACACCTTTATCTTTGGGTATCGAGACCGCTGGTGG 1568329 Query 452125 AATGATGACTAATTTAATTAAACGAGGAACT--TCTATTCCTTGTAAAAAGAGTCAAACA 452182 | ||||| || || ||| | || |||| |||| ||||| || ||| | ||| Sbjct 1568330 TGTTATGACAAAGTTGATT--CCAAGAAACTCCACTATCCCTTGCAAGAAGTCTGAAATC 1568387 Query 452183 TTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGT 452242 || ||| |||||||| |||||||| ||||| |||| ||||| ||| | Sbjct 1568388 TTCTCTACTTATGCCGATAACCAGCCAGGTGTGTTGATTCAGGTGTACGAAGGTGAAAGA 1568447 Query 452243 GCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATG 452302 ||| || || || ||| | || | || | | || || || Sbjct 1568448 ACAAGAACCAAGGACAACAATTTGTTGGGTAAGTTCGAGTTGACTGGAATCCCACCAGCA 1568507 Query 452303 CCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAAT 452362 ||||| || ||| || ||||| |||| | |||| | ||||||||||||||| | || Sbjct 1568508 CCAAGAGGGGTTCCACAGATTGAGGTTACTTTTGATATCGATGCAAATGGTATTTTGAAC 1568567 Query 452363 GTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAA 452422 || ||| || || || |||| || || | || || || || || ||||| || Sbjct 1568568 GTTTCTGCCGTCGAGAAGGGTACTGGTAAGTCCCAGAAGATCACTATCACAAATGACAAG 1568627 Query 452423 AACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGAT 452482 | | || || || || || || || || ||||| ||| || || || ||||||| Sbjct 1568628 GGCAGATTGTCAAAGGAGGAGATCGATAAGATGGTTTCTGAGGCTGAGAAGTTCAAGGCC 1568687 Query 452483 GATGATGA 452490 || ||||| Sbjct 1568688 GAGGATGA 1568695 Score = 147 bits (162), Expect = 9e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391041 TATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTT 391100 |||| | |||| | ||||||||||| || |||| ||||| ||||| || | || || Sbjct 737917 TATAGAAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTG 737976 Query 391101 GAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCT 391160 || || || |||| |||||| | | || ||||| || || |||||||| |||||||| Sbjct 737977 GAGTCTTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCA 738036 Query 391161 CCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCG 391220 ||||||||||| | || || || | || || || | || ||||| ||||||||| | Sbjct 738037 CCTGATCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCT 738096 Query 391221 GATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || || || ||| | ||||| | || |||||||| || || ||| |||||||| Sbjct 738097 GACTACAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGA 738150 >seq25 Length=757050 Score = 143 bits (158), Expect = 1e-28 Identities = 205/285 (72%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || |||||||||| || |||||||| ||||| || | ||||||||| Sbjct 742435 GTTACTCATGCTGTCGTTACTGTTCCTGCATATTTCAACGATGCCCAGAGACAAGCAACT 742376 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || ||||| || || || |||||| ||||| ||||||| ||||| || Sbjct 742375 AAAGATGCTGGTACGATTGCAGGCTTGAACGTTCTTAGAATTGTTAATGAGCCTACCGCT 742316 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC-AGAAGaaaaaaaTATTTTAGT 451491 || ||| | || || || | ||| |||| | || || |||| |||| || || Sbjct 742315 GCCGCTATTGCCTACGG-TTTGGA----CAAAGGTGACGAGGAGAAGCAAATCATT--GT 742263 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 | || || |||||||||||| |||| |||| | || || |||| || ||| | || Sbjct 742262 GTACGACTTGGGTGGAGGAACTTTTGATGTTTCTCTTCTGTCGATTGCAGGTGGTGCCTT 742203 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||||| ||| || ||||| || ||| | || ||||| || Sbjct 742202 TGAAGTTTTGGCCACAGCAGGTGACACACATTTGGGTGGTGAGGA 742158 >seq12 Length=1682134 Score = 131 bits (144), Expect = 7e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 391037 ATATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGA 391096 |||| ||| | |||| | ||||||||||| || |||| ||||| ||||| || | || Sbjct 1446038 ATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGA 1445979 Query 391097 TGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAAT 391156 || || || || || | |||||| | | || ||||| || ||||| ||||| ||||| Sbjct 1445978 GGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAAT 1445919 Query 391157 TCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTT 391216 || || ||||| || | || || || | || || || | || ||||| |||||||| Sbjct 1445918 CCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTT 1445859 Query 391217 GGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 | |||| || || || | ||||| | || |||||||| || || ||| ||||||| Sbjct 1445858 GTCGGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGG 1445802 >seq23 Length=1344041 Score = 87.8 bits (96), Expect = 7e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 451250 GAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309 ||||| ||||||||||| | | || ||||| || || || || | |||||| Sbjct 826328 GAAATCTCATCTATGGTGTTGAACAAGATGAAGGAGACCGCTGAGGCCAAGATTGGTCAG 826269 Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369 ||| || | | || ||||||||||| ||||| ||||| ||||| || | || || Sbjct 826268 CCAATTGAGAAGTCTGTCATTACTGTTCCAGCTTACTTCAACGATGCTCAGAGACAGGCT 826209 Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429 || || ||||| || ||||||||| | || ||| | |||| ||||| || ||||| Sbjct 826208 ACCAAGGATGCTGGTGCCATTGCTGGTATGAACGTTTTGAGAATCATTAACGAGCCTACC 826149 Query 451430 GCAGCTGCTCTAGCATATGGACTAGG 451455 || || ||| | || || || |||| Sbjct 826148 GCCGCCGCTATTGCTTACGGTTTAGG 826123 >seq3 Length=519016 Score = 87.8 bits (96), Expect = 7e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 248826 ACATATGGTACTTGATAAAGTTCATTCCAGAAGTATGGGTCCTAGACAAGCTATTA-CTA 248884 ||||||||| |||||| |||| ||||| | ||||| | || || ||| ||| Sbjct 54725 ACATATGGTGGATGATAAGATTCACGCCAGAGCCAGAGGTCC-ATACCAGAATTTAACTA 54783 Query 248885 GACAACCCATGGAAGGACGTTCTAAAGATGGAGGTCTTAAAATTGGAGAGATGGAAAAAG 248944 ||||||| |||||||| ||| ||| |||||| ||| | | | | ||||||||||||| || Sbjct 54784 GACAACCTATGGAAGGTCGTGCTAGAGATGGTGGTTTGAGATTCGGAGAGATGGAAAGAG 54843 Query 248945 ATGCAATGGTTGCTCATGGAATAGGACAATTCTTAAAAGAACGAATGATGGAAAATTCTG 249004 | ||| |||| ||||| | | ||||| ||||| || | ||||| ||||| Sbjct 54844 ACTGTATGATTGCCCATGGTGTGGCCGGCTTCTTGAAAGAGAGATTAATGGATTCTTCTG 54903 Query 249005 AT 249006 || Sbjct 54904 AT 54905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717691211024