Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12 188 8e-43 seq3 84.2 3e-11 >seq12 Length=1682134 Score = 188 bits (208), Expect = 8e-43 Identities = 1114/1769 (63%), Gaps = 51/1769 (3%) Strand=Plus/Plus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 |||||||| | ||||| |||| | || | || |||||||| ||||| | || Sbjct 1114856 AATTGGATGGCACGAGCGGCAGCCTGTGTACGTAAGTAGTACATACCTGTTTTCAAGCCC 1114915 Query 109438 GCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAAC 109497 |||||| | || | ||||| |||| | ||| | || || || || | Sbjct 1114916 TTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGCAAATGG 1114975 Query 109498 AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATA 109557 | |||||| || |||||||| |||| || || | |||||| ||||| ||||||| | Sbjct 1114976 ATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATATCGATGACA 1115035 Query 109558 CACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCC 109617 |||| || ||| ||||| || ||| ||||||| |||||||| | |||||||| || Sbjct 1115036 GACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTTCTTGATCTTATCGGGAACGTTT 1115095 Query 109618 ACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAG 109677 | ||| |||||||| || | | | |||| | |||||| | | ||| Sbjct 1115096 GGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCATCGTTCCAT 1115155 Query 109678 AGACCGACCTTTTTGAGATCG-TCAACAAG--ATGCTTGTTGACCACGACAAATTCACCA 109734 | || | | | ||||| |||||| | | | || || | || |||||||| Sbjct 1115156 ATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGA---ATTCACCA 1115212 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 ||||| | || | |||||||||| ||| | ||||||||||| || || | || Sbjct 1115213 GCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCC 1115272 Query 109795 AGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCC 109854 | || || | ||| ||||| || ||||| || |||| | |||| ||||| ||||| Sbjct 1115273 ATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCA 1115332 Query 109855 TTCGTCTTTACCCGCTCACGCATTGCG----TCCCAATCATAACGACCACTAAATT--TA 109908 ||||| | || | || || | ||||| || |||| | || || Sbjct 1115333 ---GTCTTGGCAATCTTA-GCCTTCAGAGTATCCCAGTC-------CCAC-AGATCCGTA 1115380 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 | || | ||||||||| ||| || | ||||| | ||| ||||| || | | Sbjct 1115381 GGCTTTTTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATAT 1115440 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 ||| || | ||||| || | || | || | || |||| | ||| || |||||| Sbjct 1115441 GTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATAC 1115500 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 | |||||||| || ||| || | || | ||| |||||| || || || | | Sbjct 1115501 AAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGGTAGTCTA 1115560 Query 110089 CAAAGAATAAACAC---ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTC 110145 || || || | ||| || |||||||| | ||| ||| |||| || | | || Sbjct 1115561 ---AGCATGAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTC 1115617 Query 110146 ATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGA 110205 ||||| ||| || || || || || | || | ||| || || || || | Sbjct 1115618 ATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAG 1115677 Query 110206 TTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG-----TTTTCG 110260 || || ||| || || || | || | || ||| | | |||| | || Sbjct 1115678 TTACGGGTAACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGAACCAGCAATGATCC 1115737 Query 110261 TCTCCTTATTGA-CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCG 110319 || || | | | || | || | | ||| || | || |||||| | ||| Sbjct 1115738 TCATCTGACTCAACAAAGGCAGGCAAACAAATGTTGGCCAAGTTACACACACCAACCTCA 1115797 Query 110320 TCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAG 110379 ||| || ||| || | || || |||||||| ||| || ||| ||||||| Sbjct 1115798 TCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAG 1115857 Query 110380 TTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||||||||| | ||| | || || |||||||| |||| |||| | || |||||||| Sbjct 1115858 TTCTTCTGATTACTCTTTCTA-TTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGT 1115916 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAG 110497 ||| ||||| | || | ||| | ||||| | || | | | || ||| | Sbjct 1115917 TTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCCTTC-ACTGTTCTTCTTC 1115975 Query 110498 CGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAG 110557 | | ||||| | |||||| |||||||| | ||| || || | ||||| ||||| | Sbjct 1115976 CACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTG 1116035 Query 110558 AAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT-TCCACCCTCCTCAACCCTC 110616 | ||||| |||| ||| |||| | | ||| || || ||| || || | | Sbjct 1116036 AGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTC-TCCACACGC 1116094 Query 110617 TTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCA 110676 ||||| || | || |||||||| | || | || | ||||| |||| ||| || Sbjct 1116095 TTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCT 1116154 Query 110677 TCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGA 110736 | ||| || || | | || | |||||| | |||||| | ||||| || || | Sbjct 1116155 TTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAG 1116214 Query 110737 TAGACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTG 110790 || | ||| |||| || ||| || ||| || | ||||| | || || Sbjct 1116215 TAAATAGCAATGGCACCTGGTCTCTTGTTACCACCT---TGATCCACATATCTAGCAGTA 1116271 Query 110791 GCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATT 110850 ||||| || | | ||| ||||| || || | |||| |||||| ||||| ||| Sbjct 1116272 CTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATA 1116331 Query 110851 CTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTA 110910 || | ||| |||||||| ||| || || | |||||||||||| || |||| | Sbjct 1116332 TACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTAGAA 1116391 Query 110911 ATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCA 110970 || ||||||| | | | ||| | || ||||| ||||| || || | || | ||| Sbjct 1116392 ATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCA 1116451 Query 110971 ATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTC 111030 | || ||||| || ||||||||||| || || || || |||||||| | || |||| Sbjct 1116452 ACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGAT 1116511 Query 111031 GCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCT 111090 ||||| |||| | | |||||| || |||| || | | || | ||| Sbjct 1116512 GCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCA 1116571 Query 111091 TTACCGTGAATACCAATGGCAACTCGCAT 111119 | ||| |||||||| | ||| |||| ||| Sbjct 1116572 TCACCATGAATACCGACGGCCACTCTCAT 1116600 >seq3 Length=519016 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 |||||||| ||| ||||||||||| | || || || | ||| || | | ||| Sbjct 450345 CTTACCGATAGCATCAATCTCATCAACAAAAACAATGGATGGTGCATTTTCCCTTGCAGT 450404 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 | || | ||||| || | || || |||||||| ||||| |||||||| | | Sbjct 450405 CTTAAACAACTCACGAACTCTTGAAGCACCGACACCTACAAACATTTCAACGAATTCAGA 450464 Query 11793 GGCAGAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | | ||| ||||||| ||| ||||| |||| ||||| || | || ||||| | | || Sbjct 450465 GCCTGAA-ACTGAATAGAATGGAACTTTAGCTTCACCCGCAGTTGCACGAGCCAACAAAG 450523 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| |||||||||| ||| | | || ||||| || ||||| || || Sbjct 450524 TTTTACCTGTACCAGGTGGTCCACACAATATCGCACCACGTGGTATCTTAGCTCC 450578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975793858400