Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12 255 7e-63 seq22 134 2e-26 seq3 89.7 6e-13 seq25 87.8 2e-12 >seq12 Length=1682134 Score = 255 bits (282), Expect = 7e-63 Identities = 925/1420 (65%), Gaps = 47/1420 (3%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 ||||||| |||||||||| | ||| | ||||| || ||||| |||| ||||| || || Sbjct 1115221 TCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTG 1115280 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 | || || || || ||||| ||||||| ||||||| ||| | |||||| | ||| Sbjct 1115281 GGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCAGT---CTT 1115337 Query 106045 G---ATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCAC 106099 | || |||| ||| ||||||||| | || | | || || |||| || Sbjct 1115338 GGCAATCTTAGCCTTCAGAGTATCCCAGTCCCACA-GATCCGTAGGCTTTTTGTTCC-AC 1115395 Query 106100 ATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCT 106159 |||||| |||| || | || | || | ||||| || ||| |||||| ||| | ||| Sbjct 1115396 ATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCC 1115455 Query 106160 TGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 106219 | | |||| | | | |||||| | |||||||||| ||| ||||| || Sbjct 1115456 TCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATC 1115515 Query 106220 CGAGCATTCATCTCCTTGGCTTCATCTGAA---TCAAATGCGTAGCGGCA-CAAAATAAA 106275 || || | |||| || ||||| | ||||| | |||| | || | || Sbjct 1115516 TGAATGTTAAGCTCCCGTGC---ATCTGGACAGTCAAAAG-GTAGTCTAAGCATGAAGAA 1115571 Query 106276 TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCG 106335 ||| || ||||| || | ||| | | |||||||||||| || ||| || || || || Sbjct 1115572 GGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACG 1115631 Query 106336 CGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 106392 || |||| || ||||| ||||||||||||| || ||||||| || |||||| Sbjct 1115632 GGC---CTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGTAAC 1115688 Query 106393 AATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT-TGACAT 106451 || || || || | || | || || | | || || | || |||| |||| Sbjct 1115689 AACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGAACCAGCAATGATCCTCATCTGACTC 1115748 Query 106452 A-CTTTGGAAGGG---CGATTGATG-CCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 | | || ||| | | || || |||| || || ||| | |||||| | | Sbjct 1115749 AACAAAGGCAGGCAAACAAATGTTGGCCAAGTTACACACACCAACCTCATCTGGAGAGGA 1115808 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | || || |||||||| ||| || || || ||||| ||||| || || Sbjct 1115809 GTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATT 1115868 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||||||| | || || ||||||||||||| |||| | || || || || || ||||| | Sbjct 1115869 ACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGC 1115928 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTC 106683 || | ||| | ||| | | || | | || || || || || |||| || Sbjct 1115929 CTCCAAAATCTGGTACCATAACTTCTGAGCCTT---CACTGTTCTTCTTCCACGTCCTTC 1115985 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 |||||| ||||| | || ||||| ||||| | || ||||||||||| Sbjct 1115986 TTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGG 1116045 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 ||||| ||| |||| | | ||| ||| | ||| || || |||||||| || | Sbjct 1116046 TGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTC-TCCACACGCTTCATAAATA 1116104 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGG 106861 ||||||||||| || | || ||| | ||| | | || ||| ||| || | ||| || Sbjct 1116105 AATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCA-CGAATCTCCTCTTTACCATGA 1116163 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | || | || || | |||||| || ||||| ||||| | || | || Sbjct 1116164 TTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCA 1116223 Query 106922 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || | || || | | ||| |||||| ||||| | || || ||| || || Sbjct 1116224 ATGGCACCTGGTCTCTTG-TTACCACCTTGATCCACATATCTAGCAGTACTGTTGAACAC 1116282 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 |||| ||| ||||| ||||| | ||| |||||| || || |||| || | | Sbjct 1116283 ACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGT 1116342 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | | || ||||| | |||||||| ||||| ||| || || ||||| Sbjct 1116343 GGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCACA 1116402 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 || | | ||| | |||||||| | || ||||| || || | || | | |||||| Sbjct 1116403 CTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCA 1116462 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 |||||||| || | ||| |||||||||||||| | ||||||| ||| || |||| Sbjct 1116463 TGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGAA 1116522 Query 107218 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 || || | |||||| ||| |||| ||||| || | ||| || || || || | Sbjct 1116523 -GTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAA 1116581 Query 107277 TGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 | |||| |||||| | ||||| | || ||| ||| |||| Sbjct 1116582 TACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTC 1116621 >seq22 Length=1510904 Score = 134 bits (148), Expect = 2e-26 Identities = 300/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||| || || |||| ||||| || |||||| | || ||| || | ||||| Sbjct 295573 TTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAGAGATTGGAC 295514 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 ||| || || || | ||||| || || ||| ||||||| |||||| || || Sbjct 295513 GACTTGATGGTTCCAAGGTTCTTCTGATTCGACTTCGCATTGCACGAATCCTTATAAAGG 295454 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCT 106657 | | | ||||| || ||||| ||||| || | ||||| || |||||| | | ||| Sbjct 295453 AGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTCCCACACCTTGCGGGCC 295394 Query 106658 GGTACAA-TGGCGTTGGC-CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 106715 | ||| || ||| | ||| || || ||||||| |||||| |||| |||||||| Sbjct 295393 --TTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGGATTCAAACT 295336 Query 106716 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC--CATTG 106773 | |||| ||| || || |||||||| ||| | |||||||||||| || Sbjct 295335 CGGGACCCCATTTGTCTGATAGTCCTGGTGC--TGTATCCTCAGAAAAGAGACTCCACAT 295278 Query 106774 ACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833 || | | || || ||| ||||||| ||||| |||||||||| | |||||||||| Sbjct 295277 CTCATCGTTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAAAAGAGATC 295218 Query 106834 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATAT 106892 || ||| || || | || ||||| || | | || ||||| |||| |||| Sbjct 295217 CCTTGCCCGCATTTCCTCCTTGCCGTGGTTCT-TCTTGAGGTCGAGGAATTCCAGAATAT 295159 Query 106893 CCGCGTGCCATGGCTCAAGATA 106914 |||| ||||| ||||||||||| Sbjct 295158 CCGCATGCCAGGGCTCAAGATA 295137 >seq3 Length=519016 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || ||||| ||||| |||||| | || | | ||| | Sbjct 450355 GCATCAATCTCATCAACAAAAACAATGGATGGTGCATTTTCCCTTGCAGTCTTAAACAAC 450414 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || ||||| ||| || || ||||| |||||||| || || || | | | | ||| | Sbjct 450415 TCACGAACTCTTGAAGCACCGACACCTACAAACATTTCAACGAATTCAGAGCCTGAA-AC 450473 Query 9492 TGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || || ||| || || |||| |||||||||| | || || || | | ||| ||||| || Sbjct 450474 TGAATAGAATGGAACTTTAGCTTCACCCGCAGTTGCACGAGCCAACAAAGTTTTACCTGT 450533 Query 9551 ACCTGG 9556 ||| || Sbjct 450534 ACCAGG 450539 >seq25 Length=757050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| | || |||||| |||| || | || ||||||||||||||||| ||||| Sbjct 282258 TATGGAAGAGTGGCACCAAGATCTGGATTAGCGGTGAAGCATGGTATTCATACCGGTGCT 282317 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||| ||||| | ||||| | ||| ||||| || || || |||||||| | | || Sbjct 282318 GGTGTCATTGACTCAGACTACAGAGGAGAAGTTAAGGTTGTACTCTTCAACTTCAGCGAT 282377 Query 155164 AAAGACTTTGAG-GTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 ||||| ||| || | || || ||| | || |||||||| | |||||| Sbjct 282378 AAAGA-TTTCAGCATTAACGCGGGTGATAGAATTGCACAACTCATTCTTGAG 282428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980593506720