Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10-
07] 28 sequences; 12,502,959 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq12 246 3e-60
seq23 201 1e-46
>seq12
Length=1682134
Score = 246 bits (272), Expect = 3e-60
Identities = 567/852 (67%), Gaps = 10/852 (1%)
Strand=Plus/Plus
Query 47956 ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCA 48015
||||||| |||||||| || | |||||| | | ||||| || |||||||| | ||
Sbjct 1115841 ATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCA 1115900
Query 48016 TAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCT 48075
| |||||||| ||||||||| |||||| || | || | ||| | || |||||
Sbjct 1115901 TGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCCT 1115960
Query 48076 TTATAACAGCTCTAGCTT-----TATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130
| | | | ||| ||| | | || | ||||| ||| || || ||||| ||
Sbjct 1115961 TCA---CTGTTCTT-CTTCCACGTCCT-TCTTTCTCGTAACGAGTGTACAATTTCTCGAA 1116015
Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190
|| || || || |||| | || || ||| |||| | | ||||| ||| |
Sbjct 1116016 CTCGTCACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTT 1116075
Query 48191 CTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATC 48250
|| | | | || | ||||||||| |||||| |||||||||||| ||| |||||
Sbjct 1116076 GTCGTTGCTCTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATC 1116135
Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310
| | | | || || || ||| |||| || | | || | |||||| | |||||
Sbjct 1116136 ACGTGCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATC 1116195
Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370
||||||||| || || || || || || || ||||||||| || ||||| ||||||||
Sbjct 1116196 AGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATC 1116255
Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430
| |||||| |||||| |||| | || | | ||| || | ||||| || ||| ||||
Sbjct 1116256 CACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACC 1116315
Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490
||| || || | |||||| ||| | | | || || ||| || ||| |||||
Sbjct 1116316 ATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACC 1116375
Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550
||| || | ||||| || | ||||||| |||| | ||||| || || ||||| |||
Sbjct 1116376 ACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGA 1116435
Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610
|||||| |||| | || || || ||||| || || | ||| || | |||
Sbjct 1116436 GTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATT 1116495
Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670
|| || ||||| |||||||| | || || ||| ||| | ||| | ||||| ||| |
Sbjct 1116496 GAACAACGTTGGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAA 1116555
Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730
|| | ||||| ||| ||||| | | || | ||| | | | ||| ||
Sbjct 1116556 CACCTTAGGAATATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGG 1116615
Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790
||||||| ||| || ||| ||| |||| ||||| || |||||| || || |||||
Sbjct 1116616 TCTTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACC 1116675
Query 48791 AAAATAGTTGTA 48802
||| ||||||||
Sbjct 1116676 AAAGTAGTTGTA 1116687
>seq23
Length=1344041
Score = 201 bits (222), Expect = 1e-46
Identities = 593/899 (66%), Gaps = 39/899 (4%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|| || || |||| |||||| || |||||||||||||| || || | || || ||| |
Sbjct 978493 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 978434
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| || || ||||||||| | || || || | || | | |||| ||| | | ||
Sbjct 978433 TCCATGAAGTCGAATGGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGC 978374
Query 18790 AGTCTATCCGCTACA-AATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTA 18847
| || || || ||| || | || || || | ||||||||| | ||||| || | ||
Sbjct 978373 AACCTGTCGGC-ACAGAACTCAACGTACTGAGC-CATCATATCGAAGTTCATACCGAGTA 978316
Query 18848 ATTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906
| ||| || || || ||| | ||||| | || | | ||||| || ||||| | ||
Sbjct 978315 AAGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATG 978257
Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTAAAC------ATCA 18958
|| | |||| || | || || | | |||| || || | ||
Sbjct 978256 AT-----------TCTCTTGATAATGACCTTACTTGGTGGATGCTTCAAGTGAGAGAACA 978208
Query 18959 AA---CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015
|| ||||||||||| |||||| ||||| ||||| | || | || ||||| || |
Sbjct 978207 AAAGGCATGCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACG 978148
Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075
| | || ||||||| ||||| || || |||||||| || || ||||| |||||||| |
Sbjct 978147 TAAGGCCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGA 978088
Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135
| || | |||||| | || ||||||||||| | ||| || |||| |||||||| ||
Sbjct 978087 AAAACACACCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCAT 978028
Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195
| | |||||| ||| ||||| |||||||| || | | ||| ||||| | || |
Sbjct 978027 TGTTTATCCATCTCAAAGCCCATAAAGCCTTCTCCTTAATAGGTGGAATTGTATGGATGG 977968
Query 19196 AATTAAATAGATA--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253
||| || | || | || || ||| | || | | ||| | || ||||| |
Sbjct 977967 CATTGAACAAGTAGTCGGACTCT-TTCT-TGTCAGTGATATAGGTCTCGATCAAAAGGGA 977910
Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313
|| | || || || || || || | ||||| || || || || |||||| ||
Sbjct 977909 ATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTC 977850
Query 19314 TGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372
| || ||| || | || || ||| | | ||||||| |||| || || |||||
Sbjct 977849 AGGTAACTGCACCT-GCTTCATAAAGTTCTGTGCCAAATTCTCATCGACAATACCATCTG 977791
Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT-- 19430
||| ||||| || || || ||| | || || | | | |||| || || || |
Sbjct 977790 AAGCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCAT-TGGCATTCATCTTG 977732
Query 19431 --ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488
|||||| || | | ||| || || | ||| | || || | ||||| ||||| |||
Sbjct 977731 TCATTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCC 977672
Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547
|| || || || ||||| | |||||||||| || || ||||| || || || |||||
Sbjct 977671 TCGGCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCT 977613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108603261920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |